CFE389
Library CF
(Link to library)
Clone ID CFE389
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16256-1
Original site URL
Representative seq. ID CFE389F
(Link to Original site)
Representative DNA sequence
>CFE389 (CFE389Q) /CSM/CF/CFE3-D/CFE389Q.Seq.d/
AAATTATAGAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATA
ACAATTTTGAACCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATG
AAACCACTGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAG
GTCGTATTTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAG
ATAGAAACAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATG
ATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTG
ATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAAATCCAAAACCAT
ATCATAATTATCACTTCTGTGCCAAAATTACCAATAGTCGTTTCACATACAAAGGTTTTG
AAACATTTAGATTCGTAGGTGATGATGATGTTTGGGTATTCATTGATAGAAAGTTGGTTG
TAGATTTGGGTGGTTTACATATTGCTCAAGAGAAAACTATTGATCTTACTAAACTTGGTC
TTGTTGTTAATAAACTCTATGTAATTGATTTCTTCTATTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
IIETQDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQG
RIYSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFD
VDQQFRNYYDDESKANPKPYHNYHFCAKITNSRFTYKGFETFRFVGDDDVWVFIDRKLVV
DLGGLHIAQEKTIDLTKLGLVVNKLYVIDFFY---


Translated Amino Acid sequence (All Frames)
Frame A:
kl*klkili*efsiniqniitilnlkmvf*q*il*nqf*mkplvfqs*pqcqilqlsink
vvfihqnylntfsliilmlqietivvkiih*illlq*i*minqiifmiiknfsqlmeedl
m*innsvtimmmkvkqiqnhiiiitsvpklpivvshtkvlkhlds*vmmmfgyslieswl
*iwvvyillkrkllillnlvlllinsm*liss---


Frame B:
nyrnsrf*fknfrstski**qf*t*kwcfnsksckinsk*nhwysrvnhnvksyncq*tr
sylftrii*ilfr**f*csr*kq*w*klsiryysynefr**iklfl**srifpn*wkri*
crstip*ll***k*sksktis*lsllcqnyq*sfhiqrf*ni*irr***clgih**kvgc
rfgwftycsreny*sy*twscc**tlcn*fll---


Frame C:
IIETQDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQG
RIYSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFD
VDQQFRNYYDDESKANPKPYHNYHFCAKITNSRFTYKGFETFRFVGDDDVWVFIDRKLVV
DLGGLHIAQEKTIDLTKLGLVVNKLYVIDFFY---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE389 (CFE389Q) /CSM/CF/CFE3-D/CFE389Q.Seq.d/ 1267 0.0
AHD606 (AHD606Q) /CSM/AH/AHD6-A/AHD606Q.Seq.d/ 1227 0.0
AHK631 (AHK631Q) /CSM/AH/AHK6-B/AHK631Q.Seq.d/ 1223 0.0
AHF255 (AHF255Q) /CSM/AH/AHF2-C/AHF255Q.Seq.d/ 1223 0.0
AHI244 (AHI244Q) /CSM/AH/AHI2-B/AHI244Q.Seq.d/ 1185 0.0
SSD423 (SSD423Q) /CSM/SS/SSD4-A/SSD423Q.Seq.d/ 1170 0.0
CHE764 (CHE764Q) /CSM/CH/CHE7-C/CHE764Q.Seq.d/ 1150 0.0
CHJ357 (CHJ357Q) /CSM/CH/CHJ3-C/CHJ357Q.Seq.d/ 1144 0.0
AFO202 (AFO202Q) /CSM/AF/AFO2-A/AFO202Q.Seq.d/ 1144 0.0
CHK343 (CHK343Q) /CSM/CH/CHK3-B/CHK343Q.Seq.d/ 1142 0.0

own update 2002.11.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 80 1e-20 3
AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds. 48 5e-19 7
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 76 7e-10 1
AE017147|AE017147.1 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the complete genome. 52 1e-05 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 0.011 14
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 32 0.013 20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 0.016 14
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 32 0.065 22
AC022639|AC022639.7 Homo sapiens, clone RP11-27K19, complete sequence. 36 0.12 8
AC026138|AC026138.3 Homo sapiens chromosome 1 clone RP11-269I13 map 1, *** SEQUENCING IN PROGRESS ***, 49 unordered pieces. 34 0.14 7
dna update 2004. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 223 4e-57
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 206 6e-52
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 200 3e-50
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 177 2e-43
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 168 1e-40
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 166 7e-40
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 161 2e-38
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 140 3e-32
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 131 1e-29
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 126 5e-28
protein update 2009. 5.13
PSORT

psg: 0.75 gvh: 0.47 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for CFE389 is cyt

5' end seq. ID CFE389F
5' end seq.
>CFE389F.Seq
AAATTATAGAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATA
ACAATTTTGAACCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATG
AAACCACTGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAG
GTCGTATTTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAG
ATAGAAACAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATG
ATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTG
ATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAAATCCAAAACCAT
ATCATAATTATCACTTCTGTGCCAAAATTACCAATAGTCGTTTCACATACAAAGGTTTTG
AAACATTTAGATTCGTAGGTGATGATGATGTTTGGGTATTCATTGATAGAAAGTTGGTTG
TAGATTTGGGTGGTTTACATATTGCTCAAGAGAAAACTATTGATCTTACTAAACTTGGTC
TTGTTGTTAATAAACTCTATGTAATTGATTTCTTCTATT----------
Length of 5' end seq. 639
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -