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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE380
Library CF
(Link to library)
Clone ID CFE380
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15397-1
Original site URL
Representative seq. ID CFE380P
(Link to Original site)
Representative DNA sequence 
>CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/
CAACAAGATGAAAGCGAACAGCCAAATCAAGGAGTTGAAGATGAGGAAGAAGAAGAATAT
GATGAAGAGGAATATGAAGAAGAAGAGGAAGATATAAACTTTTCAAAAGAAACATTAGAG
GCTGCCATGGCAACCAAAGTTTCAATTGAACAATATTATACATCACTTTTTAAATCATTA
AAAGAAAGAGATGATAGACGATGCTTTTTAGAGAAAAAAATGGAAGAATTAAATTTAAGA
GAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAGTATATTAAA
TCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATTGGTAGAGGT
GCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAA
AAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGAAGTGAACGT
GATATTTTAGCTGATAGTAATAATATTCATGGAAGTAAXXXXXXXXXXCATGGAAAAGAC
AGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTATACTGCACCAGAAGTAT
TGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATTATGTTTG
GAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGAGAAACCTATCATAAGA
TTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCAAAAGCAGAAGTAAACT
TAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTG
GTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAA
GACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAA
ATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAAT
CAAGAAGAAAGATCACTTCNTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTG
ATGCCATGAGAGATGCCTTGGTAGTGTAAACAGTAGAGATGCCTTGGTAGTATAAATAGT
AGAGAAGC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
QQDESEQPNQGVEDEEEEEYDEEEYEEEEEDINFSKETLEAAMATKVSIEQYYTSLFKSL
KERDDRRCFLEKKMEELNLREEQKSVKRRELDKKETEYIKSRRIRLTGHSFESIRIIGRG
AFGEVRLVKMKKNNKFFAMKKLDKSKMIEKHQTIHVRSERDILADSNNIHGS---

---WKRQRRVLAYSNVGTPDYTAPEVLMKDGYSAECDWWSVGVIMFGMLVGYPPFCSESI
RETYHKIMNWKQTLPKIMEEAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFF
KGVDWRRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIG
YTYRNFDAMRDALVV*tvempw*yk**rs
Translated Amino Acid sequence (All Frames) 
Frame A:
QQDESEQPNQGVEDEEEEEYDEEEYEEEEEDINFSKETLEAAMATKVSIEQYYTSLFKSL
KERDDRRCFLEKKMEELNLREEQKSVKRRELDKKETEYIKSRRIRLTGHSFESIRIIGRG
AFGEVRLVKMKKNNKFFAMKKLDKSKMIEKHQTIHVRSERDILADSNNIHGS---

---hgkdreey*hiqtlehqtilhqky**kmvtvqsviggvlvllclecwlvihhfvqnq
lekpiirl*ignkhyqkswkkqkqk*t*vqkhkislnvsspiq*lvlvlmvsrrfnlihs
lkvsiged*gkpdlqsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeerslxsislsl
vtlivilmp*empw*ckq*rclgsinsre

Frame B:
nkmkansqikelkmrkkknmmkrnmkkkrki*tfqkkh*rlpwqpkfqlnniihhflnh*
kkemiddaf*rkkwkn*i*eknknq*reenwikkkqsilnqeesdslvtllnqseslvev
llvrsdw*r*kritnfsq*kswinqk*lksikqym*evnvif*liviifmev---

---mekteksisifkrwntrlyctrsiderwlqcrv*lvecwcyyvwnvgwlstilfrin
*rnls*dyeletnitknhgrsksrsklksrstrsh*tfphrsndsywf*wcrgdsissil
*rcrlektkgnqtsnhsttlftnryfkf*sl*rgttt*tnatssikikkkdhfxrypfhw
lhls*f*cherclgsvnsrdalvv*ivek

Frame C:
tr*krtaksrs*r*grrri**rgi*rrrgryklfkrnirgchgnqsfn*tilyitf*iik
rkr**tmlfrekngrikfkrrtkiskekrig*krnrvy*ikknqthwslf*inqnhw*rc
fw*gqigkdeke*qifrnekvg*iknd*kasnntckk*t*yfs****yswk*---

---WKRQRRVLAYSNVGTPDYTAPEVLMKDGYSAECDWWSVGVIMFGMLVGYPPFCSESI
RETYHKIMNWKQTLPKIMEEAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFF
KGVDWRRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIG
YTYRNFDAMRDALVV*tvempw*yk**rs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/                       1986   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                       1185   0.0
CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                       1181   0.0
SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                       1150   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                       1118   0.0
SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                       1106   0.0
SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/                       1098   0.0
CFA456 (CFA456Q) /CSM/CF/CFA4-C/CFA456Q.Seq.d/                       1068   0.0
VFO434 (VFO434Q) /CSM/VF/VFO4-B/VFO434Q.Seq.d/                       1015   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                        977   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX322632|BX322632.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-52G20.    66   5e-15  5
BX114811|BX114811.1 RZPD Homo sapiens cDNA clone IMAGp998B123866 = IMAGE:1526699 5' EST.    66   2e-09  2
CQ720245|CQ720245.1 Sequence 6179 from Patent WO02068579.          66   2e-09  2
E24614|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    66   4e-09  2
E24613|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    66   7e-09  2
AR407839|AR407839.1 Sequence 3 from patent US 6630613.             66   1e-08  2
AR310712|AR310712.1 Sequence 3 from patent US 6559285.             66   1e-08  2
AR201455|AR201455.1 Sequence 3 from patent US 6359193.             66   1e-08  2
AF164041|AF164041.1 Homo sapiens WARTS protein kinase (WARTS) mRNA, complete cds.    66   1e-08  2
AF104413|AF104413.1 Homo sapiens large tumor suppressor 1 (LATS1) mRNA, complete cds.    66   1e-08  2
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   199   1e-49
FB811472_1(FB811472|pid:none) Sequence 30745 from Patent WO20080...   190   9e-47
AM473649_2(AM473649|pid:none) Vitis vinifera contig VV78X065883....   187   4e-46
BC151309_1(BC151309|pid:none) Bos taurus serine/threonine kinase...   187   4e-46
S42864(S42864)protein kinase (EC 2.7.1.-) - common ice plant (fr...   187   4e-46
AY335703_1(AY335703|pid:none) Synthetic construct Homo sapiens s...   187   8e-46
AK304862_1(AK304862|pid:none) Homo sapiens cDNA FLJ51774 complet...   187   8e-46
AK304755_1(AK304755|pid:none) Homo sapiens cDNA FLJ50384 complet...   187   8e-46
AC108873_10(AC108873|pid:none) Oryza sativa (japonica cultivar-g...   186   1e-45
BT065446_1(BT065446|pid:none) Zea mays full-length cDNA clone ZM...   185   2e-45
protein update 2009. 5.13
PSORT 

 psg: 0.75  gvh: 0.25  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CFE380 is nuc
5' end seq. ID CFE380F
5' end seq. 
>CFE380F.Seq
CAACAAGATGAAAGCGAACAGCCAAATCAAGGAGTTGAAGATGAGGAAGAAGAAGAATAT
GATGAAGAGGAATATGAAGAAGAAGAGGAAGATATAAACTTTTCAAAAGAAACATTAGAG
GCTGCCATGGCAACCAAAGTTTCAATTGAACAATATTATACATCACTTTTTAAATCATTA
AAAGAAAGAGATGATAGACGATGCTTTTTAGAGAAAAAAATGGAAGAATTAAATTTAAGA
GAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAGTATATTAAA
TCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATTGGTAGAGGT
GCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAA
AAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGAAGTGAACGT
GATATTTTAGCTGATAGTAATAATATTCATGGAAGTAA----------
Length of 5' end seq. 518
3' end seq. ID CFE380Z
3' end seq. 
>CFE380Z.Seq
----------CATGGAAAAGACAGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCA
GACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGG
AGTGTTGGTGTTATTATGTTTGGAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCA
ATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAA
GAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTC
ACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTC
TTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTC
TCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCA
ATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCNTTCGATATCCCTTTCATT
GGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTGGTAGTGTAAACAGTAGAG
ATGCCTTGGTAGTATAAATAGTAGAGAAGC
Length of 3' end seq. 620
Connected seq. ID CFE380P
Connected seq. 
>CFE380P.Seq
CAACAAGATGAAAGCGAACAGCCAAATCAAGGAGTTGAAGATGAGGAAGAAGAAGAATAT
GATGAAGAGGAATATGAAGAAGAAGAGGAAGATATAAACTTTTCAAAAGAAACATTAGAG
GCTGCCATGGCAACCAAAGTTTCAATTGAACAATATTATACATCACTTTTTAAATCATTA
AAAGAAAGAGATGATAGACGATGCTTTTTAGAGAAAAAAATGGAAGAATTAAATTTAAGA
GAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAGTATATTAAA
TCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATTGGTAGAGGT
GCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAA
AAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGAAGTGAACGT
GATATTTTAGCTGATAGTAATAATATTCATGGAAGTAA----------CATGGAAAAGAC
AGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTATACTGCACCAGAAGTAT
TGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATTATGTTTG
GAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGAGAAACCTATCATAAGA
TTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCAAAAGCAGAAGTAAACT
TAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTG
GTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAA
GACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAA
ATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAAT
CAAGAAGAAAGATCACTTCNTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTG
ATGCCATGAGAGATGCCTTGGTAGTGTAAACAGTAGAGATGCCTTGGTAGTATAAATAGT
AGAGAAGC
Length of connected seq. 1138
Full length Seq ID -
Full length Seq. -
Length of full length seq. -