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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE377
Library CF
(Link to library)
Clone ID CFE377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID CFE377Z
(Link to Original site)
Representative DNA sequence 
>CFE377 (CFE377Q) /CSM/CF/CFE3-D/CFE377Q.Seq.d/
XXXXXXXXXXGTCAATTATTGGTTGCACAATCAAATATTTTCCAATTTGATCATGGTCAA
GTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTTAAATTGGGTGAAGAA
TTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCAGATTTATTGGAATTG
GATCATCTTACTGTTTGCTGGTGATGTTTACTTTGGTTCAAGAATTACTNCTTAAAGGTA
CAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTTNCAGATGGTGTGGTTTTA
GAAAATAAAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---QLLVAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELD
HLTVCW*cllwfknyxlkvqsll*limvnvlifxdgvvlenk
Translated Amino Acid sequence (All Frames) 
Frame A:
---siigctikyfpi*swss*ikfkerrsrcttc*ig*rifnsfrl*kei*insrfigig
ssycllvmftlvqelllkgtviivanhgervdixrwcgfrk*s


Frame B:
---QLLVAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELD
HLTVCW*cllwfknyxlkvqsll*limvnvlifxdgvvlenk


Frame C:
---nywlhnqifsnlimvkln*iqrekvkmyhllnwvknfqqfqimkrdlnqfqiywnwi
illfagdvyfgsritx*ryshycs*sw*tc*yxqmvwf*kik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE377 (CFE377Q) /CSM/CF/CFE3-D/CFE377Q.Seq.d/                        585   e-166
VFC434 (VFC434Q) /CSM/VF/VFC4-B/VFC434Q.Seq.d/                        553   e-157
AFA127 (AFA127Q) /CSM/AF/AFA1-B/AFA127Q.Seq.d/                        553   e-157
CFD113 (CFD113Q) /CSM/CF/CFD1-A/CFD113Q.Seq.d/                        551   e-156
VSD295 (VSD295Q) /CSM/VS/VSD2-D/VSD295Q.Seq.d/                        543   e-154
VFL461 (VFL461Q) /CSM/VF/VFL4-C/VFL461Q.Seq.d/                        543   e-154
VFK853 (VFK853Q) /CSM/VF/VFK8-C/VFK853Q.Seq.d/                        543   e-154
SSK668 (SSK668Q) /CSM/SS/SSK6-C/SSK668Q.Seq.d/                        543   e-154
SSI236 (SSI236Q) /CSM/SS/SSI2-B/SSI236Q.Seq.d/                        543   e-154
SSH420 (SSH420Q) /CSM/SS/SSH4-A/SSH420Q.Seq.d/                        543   e-154
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP;  EC 2.7.7.9).   369   e-147  4
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.    36   0.047  3
CC832598|CC832598.1 ZMMBBb0184K13.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0184K13 3', genomic survey sequence.    48   0.073  1
AC123243|AC123243.4 Rattus norvegicus clone CH230-31P19, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.13   3
CC768708|CC768708.1 CH240_68A20.TV CHORI-240 Bos taurus genomic clone CH240_68A20, genomic survey sequence.    42   0.21   2
AC148234|AC148234.1 Zea mays clone ZMMBBc00-293A1, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.29   1
CC707724|CC707724.1 OGOBO77TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0347M09, genomic survey sequence.    46   0.29   1
CG374571|CG374571.1 OG2AL08TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0743B16, genomic survey sequence.    46   0.29   1
CC892863|CC892863.1 ZMMBBc0527F12f ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0527F12 5', genomic survey sequence.    46   0.29   1
AQ844800|AQ844800.1 an34c08 JM107MA2 unfiltered library Zea mays genomic, genomic survey sequence.    46   0.29   1
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   125   4e-28
CU651563_4(CU651563|pid:none) Zebrafish DNA sequence from clone ...    66   2e-15
(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    67   3e-15
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...    74   1e-12
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....    74   1e-12
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    74   1e-12
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....    74   1e-12
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...    74   1e-12
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...    74   1e-12
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...    74   1e-12
protein update 2009. 5.13
PSORT 

 psg: 0.81  gvh: 0.36  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for CFE377 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFE377Z
3' end seq. 
>CFE377Z.Seq
----------GTCAATTATTGGTTGCACAATCAAATATTTTCCAATTTGATCATGGTCAA
GTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTTAAATTGGGTGAAGAA
TTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCAGATTTATTGGAATTG
GATCATCTTACTGTTTGCTGGTGATGTTTACTTTGGTTCAAGAATTACTNCTTAAAGGTA
CAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTTNCAGATGGTGTGGTTTTA
GAAAATAAAGT
Length of 3' end seq. 301
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -