CFE374
Library CF
(Link to library)
Clone ID CFE374
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID CFE374F
(Link to Original site)
Representative DNA sequence
>CFE374 (CFE374Q) /CSM/CF/CFE3-D/CFE374Q.Seq.d/
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ff*th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTI
LVNNQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQ
RQPQRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVE---


Translated Amino Acid sequence (All Frames)
Frame A:
iflntlthk*ylsiyphtqsihingrnnnin*k*kfhsskfttrsns*rskt*sri*nhn
fseqssfnt*wksir**keiirlfn*rw*flidnkkcfkstttkitttpttttttttttt
tsttkrssqfttryfrplykqs*rlnssykfkssiskcnlk*ryeipyslcrt---


Frame B:
ff*th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTI
LVNNQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQ
RQPQRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVE---


Frame C:
ffkhtnt*iifiylsthpkysy*wqk*qyqlkmkisfk*iynqikqlki*nve*nlkpqf
**tikf*hlmeky*imkrnyqtiqlkvvisy**qkmf*ehhnkdhnnpnnhnnhnnhnnn
vnhkeilsihhkif*ttlqtilkt*lkl*iqiqh*qmqs*vki*nslltl*n---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE249 (VFE249Q) /CSM/VF/VFE2-C/VFE249Q.Seq.d/ 577 e-164
VFE196 (VFE196Q) /CSM/VF/VFE1-D/VFE196Q.Seq.d/ 577 e-164
SFL472 (SFL472Q) /CSM/SF/SFL4-C/SFL472Q.Seq.d/ 577 e-164
SFL211 (SFL211Q) /CSM/SF/SFL2-A/SFL211Q.Seq.d/ 577 e-164
SFK703 (SFK703Q) /CSM/SF/SFK7-A/SFK703Q.Seq.d/ 577 e-164
SFJ734 (SFJ734Q) /CSM/SF/SFJ7-B/SFJ734Q.Seq.d/ 577 e-164
SFJ357 (SFJ357Q) /CSM/SF/SFJ3-C/SFJ357Q.Seq.d/ 577 e-164
SFG344 (SFG344Q) /CSM/SF/SFG3-B/SFG344Q.Seq.d/ 577 e-164
SFF829 (SFF829Q) /CSM/SF/SFF8-B/SFF829Q.Seq.d/ 577 e-164
SFF802 (SFF802Q) /CSM/SF/SFF8-A/SFF802Q.Seq.d/ 577 e-164

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 40 2e-04 11
AE001387|AE001387.1 Plasmodium falciparum chromosome 2, section 24 of 73 of the complete sequence. 38 0.012 4
AC116152|AC116152.4 Mus musculus clone RP24-142E9, WORKING DRAFT SEQUENCE, 19 unordered pieces. 36 0.025 8
AC124565|AC124565.2 Mus musculus chromosome 16 clone RP23-143I23, complete sequence. 44 0.030 5
BX276126|BX276126.10 Zebrafish DNA sequence from clone CH211-232L22 in linkage group 17. 36 0.032 8
AC128085|AC128085.2 Rattus norvegicus clone CH230-88G6, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 40 0.042 6
AC110850|AC110850.5 Rattus norvegicus clone CH230-118K20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 46 0.044 6
AL808102|AL808102.8 Mouse DNA sequence from clone RP23-192O6 on chromosome 2. 38 0.046 6
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5. 34 0.056 10
AC144510|AC144510.1 Pan troglodytes BAC clone RP43-18C13 from 7, complete sequence. 38 0.093 7
dna update 2004. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog; 237 1e-61
AK067974_1(AK067974|pid:none) Oryza sativa Japonica Group cDNA c... 58 1e-07
BT058466_1(BT058466|pid:none) Salmo salar clone Contig1073 UV ex... 46 6e-04
BC055645_1(BC055645|pid:none) Danio rerio neural precursor cell ... 43 0.004
BT073010_1(BT073010|pid:none) Oncorhynchus mykiss clone omyk-evn... 43 0.004
BC078600_1(BC078600|pid:none) Xenopus laevis hypothetical protei... 43 0.004
BT075193_1(BT075193|pid:none) Osmerus mordax clone omor-eva-507-... 43 0.004
BC076245_1(BC076245|pid:none) Danio rerio neural precursor cell ... 43 0.004
EF103394_1(EF103394|pid:none) Haliotis discus discus ubiquitin-l... 42 0.007
AB024034_5(AB024034|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.007
protein update 2009. 5.13
PSORT

psg: 0.83 gvh: 0.33 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: mitochondrial
8.0 %: plasma membrane

>> prediction for CFE374 is cyt

5' end seq. ID CFE374F
5' end seq.
>CFE374F.Seq
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACAA----------
Length of 5' end seq. 520
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -