CFE334
Library CF
(Link to library)
Clone ID CFE334
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15322-1
Original site URL
Representative seq. ID CFE334P
(Link to Original site)
Representative DNA sequence
>CFE334 (CFE334Q) /CSM/CF/CFE3-B/CFE334Q.Seq.d/
GTATACGCAGAAGAAAAAAAAAGAAATGAAAAATATATTATTACTCGGTTCTGGCTTTGT
TGCAAAGCCAGCACTTGATTACCTCTTAAAAAGAGAAGATTATTTTGTAACAATTGTTAG
TTTATTCCAAAATGAATTAGACTCAATTACAAAAGGTCACGATACATCAAAATTCAAAAC
AATTCAATTAGATGTTATGAATAAATTGAATGAATTAGAAGAATATTTCCCAAAATCTGA
TTGTGTAATTAGTTTAATTCCAGCAACATTACATTCAACAGTTGCAAAATTATGTATTAA
ACATAAAACACATTTAGTTACAGCAAGTTATATTTCAGATGATATGAAAGCATTATCAGA
AGAAGCAAAGGAGGCAGGTGTTTTATTATTGAATGAACTTGGTCTTGATCCAGGTATTGA
TCATATGTCATCAATGAAGATTATTGATCATGCTAAGGAAAATGGTGGTAAGGTCACATC
ATTCGTTTCATGGTGTGGTGCGCTACCATCAACAGAATGTGCTGACAATCCATTTGGATA
CAAATTTTCATGGTCACCAAGAGGTGTACTATCATCAGCAACTCTXXXXXXXXXXCAATG
ATAATGATAGTGACCTCCTATATTGTGTGGAATCCACCATTAAAGAGTACTTTGAAAAAT
TAAAGACTGAGAGAGACGGCTTACAATTCCATTTCCCAATTATTCCAAGAGATATTGAAA
AAGATGTTCAACATGCCGTTGAAGGTTTCAAATGGTTGGGTTTATTAAGTGCTGATGAAA
AAGTTGTAAATAAGAATACTCCAATCGATAGTCTTTGCGCTTTACTCGAAAAGAAACTCT
CTTACAAAGCTGGTGAACGTGATGTAGTTGTCCTTGAACATAACTTTGTCGTCCAATACG
CTGATCGTACAGAAAAAGAAGTTTCATCACTCATTTGTTATGGTATTCCAAATGGTAGTT
CTGCAACTTCACTCACTGTTGGTGTTCCAGTTGGTATCGCAACTGAACTCATCGCTGATG
GTAAAACTACAACTAGAGGTGTTGTTGGTCCAGTAACTNCCTGAATTTTATTTACCAATT
TTAGAGAAATTAAANACTGAAAATATTGAAATGCATTGAAACGAAACAAGNAAATCAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
YTQKKKKEMKNILLLGSGFVAKPALDYLLKREDYFVTIVSLFQNELDSITKGHDTSKFKT
IQLDVMNKLNELEEYFPKSDCVISLIPATLHSTVAKLCIKHKTHLVTASYISDDMKALSE
EAKEAGVLLLNELGLDPGIDHMSSMKIIDHAKENGGKVTSFVSWCGALPSTECADNPFGY
KFSWSPRGVLSSAT---

---NDNDSDLLYCVESTIKEYFEKLKTERDGLQFHFPIIPRDIEKDVQHAVEGFKWLGLL
SADEKVVNKNTPIDSLCALLEKKLSYKAGERDVVVLEHNFVVQYADRTEKEVSSLICYGI
PNGSSATSLTVGVPVGIATELIADGKTTTRGVVGPVTX*ilftnfreikx*ky*nalkrn
kxik


Translated Amino Acid sequence (All Frames)
Frame A:
vyaeekkrnekyiitrfwlcckast*lplkkrrlfcnnc*fipk*irlnykrsryikiqn
nsircye*ie*irrifpki*lcn*fnssnitfnsckimy*t*ntfsysklyfr*yesiir
rskggrcfiie*tws*sry*syvinedy*sc*gkww*ghiirfmvwcatinrmc*qsiwi
qifmvtkrctiisns---

---q*****ppilcgihh*rvl*kikd*errltipfpnyskry*krcstcr*rfqmvgfi
kc**ksck*eysnr*slrftrketllqsw*t*cscp*t*lcrpir*syrkrsfithllwy
skw*fcnfthcwcsswyrn*thr*w*nyn*rccwssnxlnfiyqf*rn*xlkilkcietk
qxnq

Frame B:
YTQKKKKEMKNILLLGSGFVAKPALDYLLKREDYFVTIVSLFQNELDSITKGHDTSKFKT
IQLDVMNKLNELEEYFPKSDCVISLIPATLHSTVAKLCIKHKTHLVTASYISDDMKALSE
EAKEAGVLLLNELGLDPGIDHMSSMKIIDHAKENGGKVTSFVSWCGALPSTECADNPFGY
KFSWSPRGVLSSAT---

---NDNDSDLLYCVESTIKEYFEKLKTERDGLQFHFPIIPRDIEKDVQHAVEGFKWLGLL
SADEKVVNKNTPIDSLCALLEKKLSYKAGERDVVVLEHNFVVQYADRTEKEVSSLICYGI
PNGSSATSLTVGVPVGIATELIADGKTTTRGVVGPVTX*ilftnfreikx*ky*nalkrn
kxik

Frame C:
irrrkkkk*kiyyysvlallqsqhlits*kekiil*qllvyskmn*tqlqkvtihqnskq
fn*ml*in*mn*knisqnliv*lv*fqqhyiqqlqnyvlnikhi*lqqvifqmi*khyqk
kqrrqvfyy*mnlvliqvliichq*rllimlrkmvvrshhsfhgvvryhqqnvltihldt
nfhghqevyyhqql---

---mimivtsyivwnpplkstlkn*rlretaynsisqlfqeilkkmfnmplkvsngwvy*
vlmkkl*irilqsivfalyskrnsltklvnvm*lslnitlssntlivqkkkfhhsfvmvf
qmvvlqlhsllvfqlvsqlnsslmvklqlevllvq*lpefylpileklxteniemh*net
xksk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE334 (CFE334Q) /CSM/CF/CFE3-B/CFE334Q.Seq.d/ 2139 0.0
VFM605 (VFM605Q) /CSM/VF/VFM6-A/VFM605Q.Seq.d/ 1116 0.0
VFC723 (VFC723Q) /CSM/VF/VFC7-A/VFC723Q.Seq.d/ 1116 0.0
SFJ812 (SFJ812Q) /CSM/SF/SFJ8-A/SFJ812Q.Seq.d/ 1116 0.0
SFE805 (SFE805Q) /CSM/SF/SFE8-A/SFE805Q.Seq.d/ 1116 0.0
VFA508 (VFA508Q) /CSM/VF/VFA5-A/VFA508Q.Seq.d/ 1102 0.0
VFE172 (VFE172Q) /CSM/VF/VFE1-C/VFE172Q.Seq.d/ 1100 0.0
SSI295 (SSI295Q) /CSM/SS/SSI2-D/SSI295Q.Seq.d/ 1100 0.0
VFM495 (VFM495Q) /CSM/VF/VFM4-D/VFM495Q.Seq.d/ 1098 0.0
AFK803 (AFK803Q) /CSM/AF/AFK8-A/AFK803Q.Seq.d/ 1074 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL394098|AL394098.1 T3 end of clone AR0AA015A07 of library AR0AA from strain CBS 732 ofZygosaccharomyces rouxii. 46 0.002 2
AZ928392|AZ928392.1 479.dif09b09.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dif09b09.s1, DNA sequence. 40 0.004 2
AX829926|AX829926.1 Sequence 646 from Patent WO03072602. 52 0.018 1
AX818896|AX818896.1 Sequence 646 from Patent EP1338608. 52 0.018 1
AX594978|AX594978.1 Sequence 632 from Patent EP1258494. 52 0.018 1
Z71665|Z71665.1 S.cerevisiae chromosome XIV reading frame ORF YNR050c. 52 0.018 1
X77363|X77363.1 S.cerevisiae LYS9 gene. 52 0.018 1
AC138524|AC138524.1 Homo sapiens chromosome 5 clone XXyac-4X104D9, WORKING DRAFT SEQUENCE, 308 unordered pieces. 52 0.018 1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 34 0.018 11
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 38 0.022 14
dna update 2004. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NG9) RecName: Full=Probable saccharopine dehydrogenase [NADP... 376 e-103
FM992690_618(FM992690|pid:none) Candida dubliniensis CD36 chromo... 172 1e-41
BC073642_1(BC073642|pid:none) Xenopus laevis MGC82978 protein, m... 171 4e-41
(A8E657) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 169 1e-40
AM989986_8(AM989986|pid:none) Zygosaccharomyces rouxii strain CB... 169 2e-40
CR382130_918(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 169 2e-40
AY751465_1(AY751465|pid:none) Oncorhynchus mykiss lysine ketoglu... 168 3e-40
CR382138_765(CR382138|pid:none) Debaryomyces hansenii strain CBS... 166 2e-39
(A2VCW9) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 165 3e-39
(P38999) RecName: Full=Saccharopine dehydrogenase [NADP+, L-glut... 164 5e-39
protein update 2009. 5.13
PSORT

psg: 0.94 gvh: 0.46 alm: 0.38 top: 0.27 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CFE334 is cyt

5' end seq. ID CFE334F
5' end seq.
>CFE334F.Seq
GTATACGCAGAAGAAAAAAAAAGAAATGAAAAATATATTATTACTCGGTTCTGGCTTTGT
TGCAAAGCCAGCACTTGATTACCTCTTAAAAAGAGAAGATTATTTTGTAACAATTGTTAG
TTTATTCCAAAATGAATTAGACTCAATTACAAAAGGTCACGATACATCAAAATTCAAAAC
AATTCAATTAGATGTTATGAATAAATTGAATGAATTAGAAGAATATTTCCCAAAATCTGA
TTGTGTAATTAGTTTAATTCCAGCAACATTACATTCAACAGTTGCAAAATTATGTATTAA
ACATAAAACACATTTAGTTACAGCAAGTTATATTTCAGATGATATGAAAGCATTATCAGA
AGAAGCAAAGGAGGCAGGTGTTTTATTATTGAATGAACTTGGTCTTGATCCAGGTATTGA
TCATATGTCATCAATGAAGATTATTGATCATGCTAAGGAAAATGGTGGTAAGGTCACATC
ATTCGTTTCATGGTGTGGTGCGCTACCATCAACAGAATGTGCTGACAATCCATTTGGATA
CAAATTTTCATGGTCACCAAGAGGTGTACTATCATCAGCAACTCT----------
Length of 5' end seq. 585
3' end seq. ID CFE334Z
3' end seq.
>CFE334Z.Seq
----------CAATGATAATGATAGTGACCTCCTATATTGTGTGGAATCCACCATTAAAG
AGTACTTTGAAAAATTAAAGACTGAGAGAGACGGCTTACAATTCCATTTCCCAATTATTC
CAAGAGATATTGAAAAAGATGTTCAACATGCCGTTGAAGGTTTCAAATGGTTGGGTTTAT
TAAGTGCTGATGAAAAAGTTGTAAATAAGAATACTCCAATCGATAGTCTTTGCGCTTTAC
TCGAAAAGAAACTCTCTTACAAAGCTGGTGAACGTGATGTAGTTGTCCTTGAACATAACT
TTGTCGTCCAATACGCTGATCGTACAGAAAAAGAAGTTTCATCACTCATTTGTTATGGTA
TTCCAAATGGTAGTTCTGCAACTTCACTCACTGTTGGTGTTCCAGTTGGTATCGCAACTG
AACTCATCGCTGATGGTAAAACTACAACTAGAGGTGTTGTTGGTCCAGTAACTNCCTGAA
TTTTATTTACCAATTTTAGAGAAATTAAANACTGAAAATATTGAAATGCATTGAAACGAA
ACAAGNAAATCAAAA
Length of 3' end seq. 545
Connected seq. ID CFE334P
Connected seq.
>CFE334P.Seq
GTATACGCAGAAGAAAAAAAAAGAAATGAAAAATATATTATTACTCGGTTCTGGCTTTGT
TGCAAAGCCAGCACTTGATTACCTCTTAAAAAGAGAAGATTATTTTGTAACAATTGTTAG
TTTATTCCAAAATGAATTAGACTCAATTACAAAAGGTCACGATACATCAAAATTCAAAAC
AATTCAATTAGATGTTATGAATAAATTGAATGAATTAGAAGAATATTTCCCAAAATCTGA
TTGTGTAATTAGTTTAATTCCAGCAACATTACATTCAACAGTTGCAAAATTATGTATTAA
ACATAAAACACATTTAGTTACAGCAAGTTATATTTCAGATGATATGAAAGCATTATCAGA
AGAAGCAAAGGAGGCAGGTGTTTTATTATTGAATGAACTTGGTCTTGATCCAGGTATTGA
TCATATGTCATCAATGAAGATTATTGATCATGCTAAGGAAAATGGTGGTAAGGTCACATC
ATTCGTTTCATGGTGTGGTGCGCTACCATCAACAGAATGTGCTGACAATCCATTTGGATA
CAAATTTTCATGGTCACCAAGAGGTGTACTATCATCAGCAACTCT----------CAATG
ATAATGATAGTGACCTCCTATATTGTGTGGAATCCACCATTAAAGAGTACTTTGAAAAAT
TAAAGACTGAGAGAGACGGCTTACAATTCCATTTCCCAATTATTCCAAGAGATATTGAAA
AAGATGTTCAACATGCCGTTGAAGGTTTCAAATGGTTGGGTTTATTAAGTGCTGATGAAA
AAGTTGTAAATAAGAATACTCCAATCGATAGTCTTTGCGCTTTACTCGAAAAGAAACTCT
CTTACAAAGCTGGTGAACGTGATGTAGTTGTCCTTGAACATAACTTTGTCGTCCAATACG
CTGATCGTACAGAAAAAGAAGTTTCATCACTCATTTGTTATGGTATTCCAAATGGTAGTT
CTGCAACTTCACTCACTGTTGGTGTTCCAGTTGGTATCGCAACTGAACTCATCGCTGATG
GTAAAACTACAACTAGAGGTGTTGTTGGTCCAGTAACTNCCTGAATTTTATTTACCAATT
TTAGAGAAATTAAANACTGAAAATATTGAAATGCATTGAAACGAAACAAGNAAATCAAAA
Length of connected seq. 1130
Full length Seq ID -
Full length Seq. -
Length of full length seq. -