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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE321
Library CF
(Link to library)
Clone ID CFE321
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID CFE321Z
(Link to Original site)
Representative DNA sequence 
>CFE321 (CFE321Q) /CSM/CF/CFE3-A/CFE321Q.Seq.d/
XXXXXXXXXXGAGCCACATCCAGAATTTGCTCAACATAAATTTNACGTCTCTGGTTTCGC
TGCTCGTCAACCATACAATCATCCAAATGNCGACTTTGTTCAACCAGGTGATTTATATAG
ACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGG
TGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGA
TTTAGGTGCTCGTTTATGTAAGGGTNCTTGGTATTGATGTTAATGATGTCATCAAATTCG
CTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAA
AAAAATAAAAAATTAANACACANNCTTTTTTAATTANAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---PHPEFAQHKFXVSGFAARQPYNHPNXDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGV
TIKEIQVRAVSNFYKADKDLGARLCKGXWY*c**chqirc*iklvnqyiknnkkikk*kk
ikn*xtxffnxkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---shiqnllninxtslvsllvnhtiiqmxtlfnqviyidsclkmpnlvssli*svtcpv
spskkfkfvpfqtftrltki*vlvyvrvlgidvndvikfaarsnl*inilkiikk*knkk
k*kixtxxflixkk


Frame B:
---atsricst*ixrlwfrcsstiqsskxrlcstr*fi*thv*rcqisfrl*fsrshvrc
hhqrnssscrfkllqg*qrfrcsfm*gxlvlmlmmssnslldqtcksiy*k**knkkikk
nkklxhxlf*lxkk


Frame C:
---PHPEFAQHKFXVSGFAARQPYNHPNXDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGV
TIKEIQVRAVSNFYKADKDLGARLCKGXWY*c**chqirc*iklvnqyiknnkkikk*kk
ikn*xtxffnxkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE321 (CFE321Q) /CSM/CF/CFE3-A/CFE321Q.Seq.d/                        617   e-176
VSE313 (VSE313Q) /CSM/VS/VSE3-A/VSE313Q.Seq.d/                        607   e-173
VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/                        607   e-173
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/                        607   e-173
SLI203 (SLI203Q) /CSM/SL/SLI2-A/SLI203Q.Seq.d/                        607   e-173
SLH603 (SLH603Q) /CSM/SL/SLH6-A/SLH603Q.Seq.d/                        607   e-173
SLE879 (SLE879Q) /CSM/SL/SLE8-D/SLE879Q.Seq.d/                        607   e-173
SLC531 (SLC531Q) /CSM/SL/SLC5-B/SLC531Q.Seq.d/                        607   e-173
SLC206 (SLC206Q) /CSM/SL/SLC2-A/SLC206Q.Seq.d/                        607   e-173
SLB111 (SLB111Q) /CSM/SL/SLB1-A/SLB111Q.Seq.d/                        607   e-173
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   494   e-167  2
AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.   494   e-167  2
CR286664|CR286664.1 Oryza sativa  cDNA clone:y845a10p3.            44   1.5    1
AE004163|AE004163.1 Vibrio cholerae chromosome I, section 71 of 251 of the complete chromosome.    44   1.5    1
AC102859|AC102859.1 Mus musculus clone RP24-511B3, LOW-PASS SEQUENCE SAMPLING.    36   1.9    2
AC097463|AC097463.2 Homo sapiens BAC clone RP11-18O19 from 2, complete sequence.    36   4.5    4
AC105383|AC105383.3 Homo sapiens BAC clone RP11-9G1 from 4, complete sequence.    40   4.7    2
AC130810|AC130810.12 Medicago truncatula clone mth2-36b14, complete sequence.    34   7.7    5
AY019447|AY019447.1 Oryza sativa microsatellite MRG1772 containing (AT)X35, closest to marker S10847A, genomic sequence.    32   9.1    2
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   173   8e-46
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...    76   4e-13
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...    75   5e-13
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...    75   5e-13
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...    75   7e-13
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...    75   7e-13
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...    70   2e-11
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...    70   2e-11
BA000030_3058(BA000030|pid:none) Streptomyces avermitilis MA-468...    66   4e-10
AE003852_1561(AE003852|pid:none) Vibrio cholerae O1 biovar eltor...    60   3e-08
protein update 2009. 5.13
PSORT 

 psg: 0.91  gvh: 0.30  alm: 0.48  top: 0.67  tms: 0.00  mit: 0.23  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFE321 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFE321Z
3' end seq. 
>CFE321Z.Seq
----------GAGCCACATCCAGAATTTGCTCAACATAAATTTNACGTCTCTGGTTTCGC
TGCTCGTCAACCATACAATCATCCAAATGNCGACTTTGTTCAACCAGGTGATTTATATAG
ACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGG
TGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGA
TTTAGGTGCTCGTTTATGTAAGGGTNCTTGGTATTGATGTTAATGATGTCATCAAATTCG
CTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAA
AAAAATAAAAAATTAANACACANNCTTTTTTAATTANAAAAAAAAA
Length of 3' end seq. 396
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -