CFE313
Library CF
(Link to library)
Clone ID CFE313
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12859-1|Contig-U16301-1
Original site URL
Representative seq. ID CFE313P
(Link to Original site)
Representative DNA sequence
>CFE313 (CFE313Q) /CSM/CF/CFE3-A/CFE313Q.Seq.d/
ATTTATATAAATAAACTACGCATTATAATGTCTGTAACTTTAAAAAATATTATTGCACCA
ACACCAGCAACTACTCGTGGTAAATCAGTAGCAATTAATGGTGACCCAAAGGGTGAAAAT
ATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAAGAATCCAATGGTAGCA
GATACTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTATGCACCAAGTGGTAAT
TATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGATACATTACAAAAGGAA
CATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCTTGATATTGCATGGACA
TCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAGATTTGGTGCAGCCATC
CTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTCAAAGATGATTCTCTCT
TGTGACATTAAATCAACTCGTCCATTCAGAGCCGCCACTGGTAGTGAAGATTTTGTAGTC
AATTGGTTCGAAGGTCXXXXXXXXXXTGNTCAAATNGTGAAGTTATCGTTTGGAGTGGTA
AAAAANCCAAATNTAAAGGNTGGGTTAACCANACCGCTCGNATTAANGCNGTCGCTTGGN
CTAANGATTNTAAATTTGNTGCCCCNGCNTCNCTCGATTCNCAAATTTACNTTTGGAATG
TTGAAAANCCNACCGCNTCNCCAGTTCNAGTTAAAAACNCNCNTTTAGGTGGNGGCAATG
ATGTTANTTATGGNTCNAACAATGAAATTTTCTCCGCAGGNAATGAAGGTGCNATTAAAA
TTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
IYINKLRIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVA
DTYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWT
SDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGSEDFVV
NWFEG---

---XSNXEVIVWSGKKXKXKGWVNXTARIXAVAWXXDXKFXAPASLDSQIYXWNVEXPTA
SPVXVKNXXLGGGNDVXYGSNNEIFSAGNEGAIKI


Translated Amino Acid sequence (All Frames)
Frame A:
IYINKLRIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVA
DTYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWT
SDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGSEDFVV
NWFEG---

---XSNXEVIVWSGKKXKXKGWVNXTARIXAVAWXXDXKFXAPASLDSQIYXWNVEXPTA
SPVXVKNXXLGGGNDVXYGSNNEIFSAGNEGAIKI

Frame B:
fi*inyal*cl*l*killhqhqqllvvnq*qlmvtqrvkilymqvvavlllem*riqw*q
iltmnihvkpllqsmhqvviilqvvmfkviyvfgihykrnis*kqltky*mvqslilhgh
qiinv*l*lvmvkrdlvqpsfgivvhhvvkslvtqr*fslvtlnqlvhsepplvvkil*s
igskv---

---xqxvklsfgvvkxpnxkxgltxplxlxxslglxixnlxpxxxsixkftfgmlkxxpx
xqfxlktxx*vxammlxmxxtmkfspqxmkvxlkf

Frame C:
lyk*tthynvcnfkkyyctntsnysw*issn*w*pkg*kycickw*qyyy*kckesngsr
yll*tsmsnhcckvctkw*lyckw*csr*ftylgyitkgtylksnlqsiewcnp*ycmdi
r*stfscsw*w*reiwcshplg*wfimw*nhwslkddsll*h*inssiqsrhw**rfcsq
lvrr---

---xkx*syrlew*kxqx*rxg*pxrsx*xxrlx*xx*ixcpxxxrfxnlxlec*kxxrx
xsss*kxxfrwxq*cxlwxxq*nflrrx*rcx*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE313 (CFE313Q) /CSM/CF/CFE3-A/CFE313Q.Seq.d/ 1421 0.0
SFH157 (SFH157Q) /CSM/SF/SFH1-C/SFH157Q.Seq.d/ 1078 0.0
SFE564 (SFE564Q) /CSM/SF/SFE5-C/SFE564Q.Seq.d/ 1078 0.0
CHA508 (CHA508Q) /CSM/CH/CHA5-A/CHA508Q.Seq.d/ 1078 0.0
CFG102 (CFG102Q) /CSM/CF/CFG1-A/CFG102Q.Seq.d/ 1078 0.0
CFE647 (CFE647Q) /CSM/CF/CFE6-B/CFE647Q.Seq.d/ 1078 0.0
CFB361 (CFB361Q) /CSM/CF/CFB3-C/CFB361Q.Seq.d/ 1078 0.0
AHJ115 (AHJ115Q) /CSM/AH/AHJ1-A/AHJ115Q.Seq.d/ 1078 0.0
AFO469 (AFO469Q) /CSM/AF/AFO4-C/AFO469Q.Seq.d/ 1078 0.0
AFM457 (AFM457Q) /CSM/AF/AFM4-C/AFM457Q.Seq.d/ 1078 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds. 1078 0.0 1
AF295546|AF295546.1 Malawimonas jakobiformis mitochondrial DNA, complete genome. 38 0.33 5
AC099651|AC099651.4 Homo sapiens BAC clone RP11-685B22 from 7, complete sequence. 46 0.82 1
X64346|X64346.1 Saimiriine herpesvirus 2 complete genome. 34 2.3 6
AC141644|AC141644.2 Mus musculus chromosome UNK clone RP23-115F21, WORKING DRAFT SEQUENCE, 7 unordered pieces. 34 2.5 7
AC122343|AC122343.3 Mus musculus chromosome 7 clone RP23-359L18, complete sequence. 44 3.2 1
AC112365|AC112365.4 Rattus norvegicus clone CH230-109I2, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 3.2 1
AC109055|AC109055.4 Rattus norvegicus clone CH230-107I2, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces. 44 3.2 1
AZ549190|AZ549190.1 ENTFF35TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 3.2 1
BS000068|BS000068.1 Pan troglodytes chromosome 22 clone:RP43-046F21, map 22, complete sequences. 44 3.2 1
dna update 2004. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p... 356 6e-97
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;... 258 2e-67
BT045059_1(BT045059|pid:none) Salmo salar clone ssal-rgf-510-334... 219 7e-56
AY394939_1(AY394939|pid:none) Danio rerio clone RK046A1C09 WD re... 219 8e-56
(O93277) RecName: Full=WD repeat-containing protein 1; AltName: ... 218 2e-55
AB084171_1(AB084171|pid:none) Cavia porcellus WDR1 mRNA for WD r... 217 4e-55
(Q5RKI0) RecName: Full=WD repeat-containing protein 1; &AY98648... 216 7e-55
(O75083) RecName: Full=WD repeat-containing protein 1; AltName: ... 216 7e-55
AK004858_1(AK004858|pid:none) Mus musculus adult male liver cDNA... 216 9e-55
CR860191_1(CR860191|pid:none) Pongo abelii mRNA; cDNA DKFZp469E0... 216 9e-55
protein update 2009. 5.13
PSORT

psg: 0.84 gvh: 0.36 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: cytoskeletal
16.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for CFE313 is cyt

5' end seq. ID CFE313F
5' end seq.
>CFE313F.Seq
ATTTATATAAATAAACTACGCATTATAATGTCTGTAACTTTAAAAAATATTATTGCACCA
ACACCAGCAACTACTCGTGGTAAATCAGTAGCAATTAATGGTGACCCAAAGGGTGAAAAT
ATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAAGAATCCAATGGTAGCA
GATACTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTATGCACCAAGTGGTAAT
TATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGATACATTACAAAAGGAA
CATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCTTGATATTGCATGGACA
TCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAGATTTGGTGCAGCCATC
CTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTCAAAGATGATTCTCTCT
TGTGACATTAAATCAACTCGTCCATTCAGAGCCGCCACTGGTAGTGAAGATTTTGTAGTC
AATTGGTTCGAAGGTC----------
Length of 5' end seq. 556
3' end seq. ID CFE313Z
3' end seq.
>CFE313Z.Seq
----------TGNTCAAATNGTGAAGTTATCGTTTGGAGTGGTAAAAAANCCAAATNTAA
AGGNTGGGTTAACCANACCGCTCGNATTAANGCNGTCGCTTGGNCTAANGATTNTAAATT
TGNTGCCCCNGCNTCNCTCGATTCNCAAATTTACNTTTGGAATGTTGAAAANCCNACCGC
NTCNCCAGTTCNAGTTAAAAACNCNCNTTTAGGTGGNGGCAATGATGTTANTTATGGNTC
NAACAATGAAATTTTCTCCGCAGGNAATGAAGGTGCNATTAAAATTT
Length of 3' end seq. 277
Connected seq. ID CFE313P
Connected seq.
>CFE313P.Seq
ATTTATATAAATAAACTACGCATTATAATGTCTGTAACTTTAAAAAATATTATTGCACCA
ACACCAGCAACTACTCGTGGTAAATCAGTAGCAATTAATGGTGACCCAAAGGGTGAAAAT
ATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAAGAATCCAATGGTAGCA
GATACTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTATGCACCAAGTGGTAAT
TATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGATACATTACAAAAGGAA
CATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCTTGATATTGCATGGACA
TCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAGATTTGGTGCAGCCATC
CTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTCAAAGATGATTCTCTCT
TGTGACATTAAATCAACTCGTCCATTCAGAGCCGCCACTGGTAGTGAAGATTTTGTAGTC
AATTGGTTCGAAGGTC----------TGNTCAAATNGTGAAGTTATCGTTTGGAGTGGTA
AAAAANCCAAATNTAAAGGNTGGGTTAACCANACCGCTCGNATTAANGCNGTCGCTTGGN
CTAANGATTNTAAATTTGNTGCCCCNGCNTCNCTCGATTCNCAAATTTACNTTTGGAATG
TTGAAAANCCNACCGCNTCNCCAGTTCNAGTTAAAAACNCNCNTTTAGGTGGNGGCAATG
ATGTTANTTATGGNTCNAACAATGAAATTTTCTCCGCAGGNAATGAAGGTGCNATTAAAA
TTT
Length of connected seq. 833
Full length Seq ID -
Full length Seq. -
Length of full length seq. -