CFE262
Library CF
(Link to library)
Clone ID CFE262
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFE262P
(Link to Original site)
Representative DNA sequence
>CFE262 (CFE262Q) /CSM/CF/CFE2-C/CFE262Q.Seq.d/
AAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGT
CCATGGGGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCA
CCACCACGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGTTATTCATGT
CGTGTCATTAAAGGTTGTGCCACTTGTGTCAGAGATGCCCGTCCACCACATAACCTTTGT
CGTGGTTTTGGTTGTCCAGAAGGCTCCCATTGTGAAGTTCTTGAAAAACATCCAGTTTGT
GTTAGAAATCATGTTCCACCACACCCACCACCACCACCACAAATTTGCGGTAGTGTAAAT
TGTGGTCCAGGTTATATTTGTACAATTATCAATGGTCATCCAACTTGTATTCGTGGTGAT
GGTTATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACC
AATATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGT
TCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAA
CTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGXXXXXXXX
XXATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTC
ATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAA
CTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTG
GTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCAT
CACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTT
CAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTC
CATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
KQGGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSC
RVIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEKHPVCVRNHVPPHPPPPPQICGSVN
CGPGYICTIINGHPTCIRGDGYLCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPG
SSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIR---

---ICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGT
TTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASS
SAPSSSASSSAASSAA


Translated Amino Acid sequence (All Frames)
Frame A:
KQGGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSC
RVIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEKHPVCVRNHVPPHPPPPPQICGSVN
CGPGYICTIINGHPTCIRGDGYLCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPG
SSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIR---

---ICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGT
TTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASS
SAPSSSASSSAASSAA

Frame B:
nkvvvhaayhimtvvvifnvhgativsmnmvnadvyhtdhhhvhqltnavinivhmvihv
vslkvvplvsempvhhitfvvvlvvqkapivkflkniqfvleimfhhthhhhhkfavv*i
vvqvifvqlsmviqlvfvvmviyvikpvvhtiinvkplapis*nvhqrmtnvngivvhqv
paasivetvhtvlpimyshnfvkllnvqlislvk*le---

---fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvel
qlvvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqv
vlhhhqlqvqlhhqlq

Frame C:
trw*cmlrtts*rlw*ysmsmgpllcq*tw*mqmcttqttttsts*pmp*stlstwlfms
ch*rlchlcqrcpstt*plswfwlsrrlpl*ss*ktsslc*kscsttptttttnlr*ckl
wsrlylynyqwssnlysw*wlfm*snplstrlsm*nh*hqyremftke*rm*maslstrf
qllq**krstlscq*cipttl*sysmsn*fll*nd*---

---lysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwny
nwwfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*
csiiisfkfsciisck

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/ 795 0.0
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/ 795 0.0
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/ 795 0.0
VFA779 (VFA779Q) /CSM/VF/VFA7-D/VFA779Q.Seq.d/ 795 0.0
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/ 795 0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/ 795 0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/ 795 0.0
SLI293 (SLI293Q) /CSM/SL/SLI2-D/SLI293Q.Seq.d/ 795 0.0
SLI237 (SLI237Q) /CSM/SL/SLI2-B/SLI237Q.Seq.d/ 795 0.0
SLG857 (SLG857Q) /CSM/SL/SLG8-C/SLG857Q.Seq.d/ 795 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds. 795 0.0 4
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read. 135 1e-27 1
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A). 36 0.55 2
CD069679|CD069679.1 MA2-0011T-V070-E04-U.B MA2-0011 Schistosoma mansoni cDNA clone MA2-0011T-V070-E04.B, mRNA sequence. 34 2.7 2
CD069686|CD069686.1 MA2-0011T-V070-E11-U.B MA2-0011 Schistosoma mansoni cDNA clone MA2-0011T-V070-E11.B, mRNA sequence. 34 2.7 2
AK100095|AK100095.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence. 36 3.3 2
BX284669|BX284669.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-280E18. 44 4.1 1
AY344488|AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds. 44 4.1 1
AK072391|AK072391.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023077L03, full insert sequence. 44 4.1 1
AC027658|AC027658.1 Oryza sativa subsp. japonica BAC nbxb0006I13, chromosome 10, complete sequence. 44 4.1 1
dna update 2004. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 428 e-122
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 428 e-122
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 90 1e-16
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 86 3e-15
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 84 1e-14
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 68 5e-10
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 64 1e-08
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 63 1e-08
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 63 1e-08
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 56 2e-06
protein update 2009. 5.13
PSORT

psg: 0.86 gvh: 0.28 alm: 0.45 top: 0.43 tms: 0.00 mit: 0.10 mip: 0.14
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for CFE262 is nuc

5' end seq. ID CFE262F
5' end seq.
>CFE262F.Seq
AAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGT
CCATGGGGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCA
CCACCACGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGTTATTCATGT
CGTGTCATTAAAGGTTGTGCCACTTGTGTCAGAGATGCCCGTCCACCACATAACCTTTGT
CGTGGTTTTGGTTGTCCAGAAGGCTCCCATTGTGAAGTTCTTGAAAAACATCCAGTTTGT
GTTAGAAATCATGTTCCACCACACCCACCACCACCACCACAAATTTGCGGTAGTGTAAAT
TGTGGTCCAGGTTATATTTGTACAATTATCAATGGTCATCCAACTTGTATTCGTGGTGAT
GGTTATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACC
AATATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGT
TCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAA
CTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAG--------
--
Length of 5' end seq. 652
3' end seq. ID CFE262Z
3' end seq.
>CFE262Z.Seq
----------ATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTG
CCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAAC
TGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAAC
TACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGC
CTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAG
CGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAG
TAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAG
Length of 3' end seq. 401
Connected seq. ID CFE262P
Connected seq.
>CFE262P.Seq
AAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGT
CCATGGGGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCA
CCACCACGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGTTATTCATGT
CGTGTCATTAAAGGTTGTGCCACTTGTGTCAGAGATGCCCGTCCACCACATAACCTTTGT
CGTGGTTTTGGTTGTCCAGAAGGCTCCCATTGTGAAGTTCTTGAAAAACATCCAGTTTGT
GTTAGAAATCATGTTCCACCACACCCACCACCACCACCACAAATTTGCGGTAGTGTAAAT
TGTGGTCCAGGTTATATTTGTACAATTATCAATGGTCATCCAACTTGTATTCGTGGTGAT
GGTTATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACC
AATATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGT
TCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAA
CTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAG--------
--ATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTC
ATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAA
CTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTG
GTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCAT
CACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTT
CAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTC
CATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAG
Length of connected seq. 1053
Full length Seq ID -
Full length Seq. -
Length of full length seq. -