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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE259
Library CF
(Link to library)
Clone ID CFE259
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15354-1
Original site URL
Representative seq. ID CFE259P
(Link to Original site)
Representative DNA sequence 
>CFE259 (CFE259Q) /CSM/CF/CFE2-C/CFE259Q.Seq.d/
AAAATAATACACATAAAAAATTTATTAAATAAAAATGACTACAACAACAACAAATGAAGT
TTATATAGTTGATTGTATTCGTACACCAATTGGTAGAGGATATAGTAATGGATCATTACA
TTCAATACAACCAATTGATTTATTATCATATACACTGGACCAATTAATGAAAAGAAATCC
AAATGTTGATAGAGGATTAGTTGAAGATGTTATTTGTGGTGTTGTATCACCATTAAGAGA
ACAAGGTGCAAACATAGCAAGATTTGCAGCATTAAAAGCCGGATTACCAATCAATGTGCC
AGGTGTTCAATTAAATAGAATGTGTGGATCAGGTCAACAAGCTATCCATTTTGGCTCGCA
AGCAATTAGATCAGGTGATATGGATATTGTTATTGGCTGTGGTGTAGAAATGATGAGTAT
AGTACCAATGGGCAGTGATTGGCAATTAGATAATCCTAAATTTGTAGAAGGTTTTAATTT
CAAAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTGCAGAGAAATATAATTTAACAAG
AGATGAAATCGATAAATTCTCTGGTAGATCTCACGAATTAGCAGATAACGXXXXXXXXXX
TGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAAATGTCAACTTTAAAAA
CCCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCACAAATCAGCGATGGT
GCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAGGATTAAAACCACGT
GCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATATGCTATTAGGTCCA
ATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAGATCAAATTGATCTA
TATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAAAGGAATTAAATATT
GATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTCATCCATTAGGTGCA
ACTGGTTGTATTCTTATGACTAAAATGGTAAATGAATTAGAAAGATCAAATAAAAAATAC
GCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCAACTGCAACAATTATTGAAAATTGT
TCATATAAACCAATTTCAAAATTATAAAAAAATAATAAAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
k*yt*kiy*IKMTTTTTNEVYIVDCIRTPIGRGYSNGSLHSIQPIDLLSYTLDQLMKRNP
NVDRGLVEDVICGVVSPLREQGANIARFAALKAGLPINVPGVQLNRMCGSGQQAIHFGSQ
AIRSGDMDIVIGCGVEMMSIVPMGSDWQLDNPKFVEGFNFKVLHQGVSSEMIAEKYNLTR
DEIDKFSGRSHELADN---

---DKDEGIRVPVDYKKNVNFKNPHSSQMVRLVLQMLHKSAMVLLLSYWLVVV*lrn*d*
nhvlvl*lvq*laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgkrn
*ili*ikliqmvvqshmvih*vqlvvfl*lkw*mn*kdqiknthfkqcvlvlvkqlqqll
kivhinqfqnykkiikn
Translated Amino Acid sequence (All Frames) 
Frame A:
kiihiknllnkndynnnk*slys*lysytnw*ri**wiitfnttn*fiiiytgpinekks
kc**ris*rcylwccitikrtrckhskicsiksritnqcarcsik*nvwirstsypfwla
sn*ir*ygycywlwcrndeystngq*lair*s*icrrf*fqstssrcfl*ndcrei*fnk
r*nr*ilw*isrisr*---

---**r*ryscssrl*ekcql*kppfkpngkisaanasqisdgasavllvsgrlvkklgl
kprarivtctvvgsdpeymllgpipatikaleksgltkdqidlyeineafasvvlgwkke
lnidldkinpnggaiahghplgatgcilmtkmvnelersnkkyalqtmcigfgqatatii
encsykpiskl*knnkk

Frame B:
k*yt*kiy*IKMTTTTTNEVYIVDCIRTPIGRGYSNGSLHSIQPIDLLSYTLDQLMKRNP
NVDRGLVEDVICGVVSPLREQGANIARFAALKAGLPINVPGVQLNRMCGSGQQAIHFGSQ
AIRSGDMDIVIGCGVEMMSIVPMGSDWQLDNPKFVEGFNFKVLHQGVSSEMIAEKYNLTR
DEIDKFSGRSHELADN---

---DKDEGIRVPVDYKKNVNFKNPHSSQMVRLVLQMLHKSAMVLLLSYWLVVV*lrn*d*
nhvlvl*lvq*laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgkrn
*ili*ikliqmvvqshmvih*vqlvvfl*lkw*mn*kdqiknthfkqcvlvlvkqlqqll
kivhinqfqnykkiikn

Frame C:
nnthkkfik*k*lqqqqmkfi*livfvhqlvedivmdhyiqynqliyyhihwtn**keiq
mlied*lkmlfvvlyhh*enkvqt*qdlqh*kpdyqsmcqvfn*iecvdqvnklsilark
qldqviwilllavv*k**v*yqwavign*iilnl*kvliskyfikvfplk*lqrnii*qe
mksinslvdltn*qit---

---ikmkvfvfq*iirkmstlktpiqakw*d*cckcftnqrwcfccpig*wsfs*eirik
ttcsycnlysswl*sriyairsnssny*sigkewsh*rsn*si*n**slcicsfrlekgi
ky*fr*n*skwwcnrtwssircnwlysyd*ngk*irkik*kirtsnnvywfwssncnny*
klfi*tnfkiikk**k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE259 (CFE259Q) /CSM/CF/CFE2-C/CFE259Q.Seq.d/                       2163   0.0
CFA532 (CFA532Q) /CSM/CF/CFA5-B/CFA532Q.Seq.d/                       1098   0.0
SFD167 (SFD167Q) /CSM/SF/SFD1-C/SFD167Q.Seq.d/                       1092   0.0
VFN804 (VFN804Q) /CSM/VF/VFN8-A/VFN804Q.Seq.d/                       1080   0.0
VFG265 (VFG265Q) /CSM/VF/VFG2-C/VFG265Q.Seq.d/                       1072   0.0
VFO257 (VFO257Q) /CSM/VF/VFO2-C/VFO257Q.Seq.d/                       1068   0.0
SFH229 (SFH229Q) /CSM/SF/SFH2-B/SFH229Q.Seq.d/                       1059   0.0
AFN284 (AFN284Q) /CSM/AF/AFN2-D/AFN284Q.Seq.d/                       1057   0.0
VFL750 (VFL750Q) /CSM/VF/VFL7-C/VFL750Q.Seq.d/                       1023   0.0
FC-AA04 (FC-AA04Q) /CSM/FC/FC-AA/FC-AA04Q.Seq.d/                     1015   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ172173|BJ172173.1 Physcomitrella patens subsp. patens cDNA clone:pph31g22, 3' end,single read.   848   0.0    3
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   2e-08  20
CD645990|CD645990.1 SSPG491F SS pectin Sclerotinia sclerotiorum cDNA similar to 3-ketoacyl-CoA thiolase, mRNA sequence.    68   3e-07  1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36   8e-06  11
AB026669|AB026669.1 Acinetobacter sp. NCIMB9871 cyclohexanol metabolic gene cluster (orf18, orf17, orf16, orf15, orf14, orf13, orf12, chnB), partial and complete cds.    46   8e-05  2
AR321204|AR321204.1 Sequence 3754 from patent US 6562958.          42   6e-04  3
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   0.003  14
BF070769|BF070769.1 st25a12.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-23 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54   0.005  1
BG727021|BG727021.1 sae30b10.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-4292 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence.    54   0.005  1
BI784569|BI784569.1 saf56e08.y3 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-231 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54   0.005  1
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000043_2777(BA000043|pid:none) Geobacillus kaustophilus HTA426...   190   4e-90
AE017221_330(AE017221|pid:none) Thermus thermophilus HB27, compl...   186   6e-84
CP000384_2303(CP000384|pid:none) Mycobacterium sp. MCS, complete...   171   2e-79
CP000580_2328(CP000580|pid:none) Mycobacterium sp. JLS, complete...   171   5e-79
CP000480_5022(CP000480|pid:none) Mycobacterium smegmatis str. MC...   175   2e-76
CP000656_1470(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...   177   3e-76
CT573213_2441(CT573213|pid:none) Frankia alni str. ACN14A chromo...   175   1e-75
CP000384_4672(CP000384|pid:none) Mycobacterium sp. MCS, complete...   183   3e-75
CP000089_2329(CP000089|pid:none) Dechloromonas aromatica RCB, co...   171   4e-75
AP011115_2622(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...   164   4e-75
protein update 2009. 5.13
PSORT 

 psg: 0.66  gvh: 0.35  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFE259 is cyt
5' end seq. ID CFE259F
5' end seq. 
>CFE259F.Seq
AAAATAATACACATAAAAAATTTATTAAATAAAAATGACTACAACAACAACAAATGAAGT
TTATATAGTTGATTGTATTCGTACACCAATTGGTAGAGGATATAGTAATGGATCATTACA
TTCAATACAACCAATTGATTTATTATCATATACACTGGACCAATTAATGAAAAGAAATCC
AAATGTTGATAGAGGATTAGTTGAAGATGTTATTTGTGGTGTTGTATCACCATTAAGAGA
ACAAGGTGCAAACATAGCAAGATTTGCAGCATTAAAAGCCGGATTACCAATCAATGTGCC
AGGTGTTCAATTAAATAGAATGTGTGGATCAGGTCAACAAGCTATCCATTTTGGCTCGCA
AGCAATTAGATCAGGTGATATGGATATTGTTATTGGCTGTGGTGTAGAAATGATGAGTAT
AGTACCAATGGGCAGTGATTGGCAATTAGATAATCCTAAATTTGTAGAAGGTTTTAATTT
CAAAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTGCAGAGAAATATAATTTAACAAG
AGATGAAATCGATAAATTCTCTGGTAGATCTCACGAATTAGCAGATAACG----------
Length of 5' end seq. 590
3' end seq. ID CFE259Z
3' end seq. 
>CFE259Z.Seq
----------TGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAAATGTCA
ACTTTAAAAACCCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCACAAAT
CAGCGATGGTGCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAGGATT
AAAACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATATGCT
ATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAGATCA
AATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAAAGGA
ATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTCATCC
ATTAGGTGCAACTGGTTGTATTCTTATGACTAAAATGGTAAATGAATTAGAAAGATCAAA
TAAAAAATACGCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCAACTGCAACAATTAT
TGAAAATTGTTCATATAAACCAATTTCAAAATTATAAAAAAATAATAAAAAAC
Length of 3' end seq. 583
Connected seq. ID CFE259P
Connected seq. 
>CFE259P.Seq
AAAATAATACACATAAAAAATTTATTAAATAAAAATGACTACAACAACAACAAATGAAGT
TTATATAGTTGATTGTATTCGTACACCAATTGGTAGAGGATATAGTAATGGATCATTACA
TTCAATACAACCAATTGATTTATTATCATATACACTGGACCAATTAATGAAAAGAAATCC
AAATGTTGATAGAGGATTAGTTGAAGATGTTATTTGTGGTGTTGTATCACCATTAAGAGA
ACAAGGTGCAAACATAGCAAGATTTGCAGCATTAAAAGCCGGATTACCAATCAATGTGCC
AGGTGTTCAATTAAATAGAATGTGTGGATCAGGTCAACAAGCTATCCATTTTGGCTCGCA
AGCAATTAGATCAGGTGATATGGATATTGTTATTGGCTGTGGTGTAGAAATGATGAGTAT
AGTACCAATGGGCAGTGATTGGCAATTAGATAATCCTAAATTTGTAGAAGGTTTTAATTT
CAAAGTACTTCATCAAGGTGTTTCCTCTGAAATGATTGCAGAGAAATATAATTTAACAAG
AGATGAAATCGATAAATTCTCTGGTAGATCTCACGAATTAGCAGATAACG----------
TGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAAATGTCAACTTTAAAAA
CCCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCACAAATCAGCGATGGT
GCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAGGATTAAAACCACGT
GCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATATGCTATTAGGTCCA
ATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAGATCAAATTGATCTA
TATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAAAGGAATTAAATATT
GATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTCATCCATTAGGTGCA
ACTGGTTGTATTCTTATGACTAAAATGGTAAATGAATTAGAAAGATCAAATAAAAAATAC
GCACTTCAAACAATGTGTATTGGTTTTGGTCAAGCAACTGCAACAATTATTGAAAATTGT
TCATATAAACCAATTTCAAAATTATAAAAAAATAATAAAAAAC
Length of connected seq. 1173
Full length Seq ID -
Full length Seq. -
Length of full length seq. -