CFE238
Library CF
(Link to library)
Clone ID CFE238
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16178-1
Original site URL
Representative seq. ID CFE238P
(Link to Original site)
Representative DNA sequence
>CFE238 (CFE238Q) /CSM/CF/CFE2-B/CFE238Q.Seq.d/
AATTATCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTTACTTAATCAA
TAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAATAAAAAACAT
TGTATTATATTCCACCTCATATTTTTTTTTTCCATXXXXXXXXXXATGGTGTTTTTGCCG
TTGCAAACTTTTCAACCAATCCACCAACCATCNAAAAACTCAGAGTTCGTAATTTACCAT
TACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCTC
CACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTG
AAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAG
ACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTA
CTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCCTGATTTCAGTACCNCTGGT
TTAGATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAGCTAAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
nypnyklykicvfvffllnq*kiktnql*xkpl*KLNKKHCIIFHLIFFFS---

---GVFAVANFSTNPPTIXKLRVRNLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYS
GEMDKASEGGAAAGSETSARKLFQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVV
S*fqyxwfrw*hcrmacksx*s*k


Translated Amino Acid sequence (All Frames)
Frame A:
nypnyklykicvfvffllnq*kiktnql*xkpl*KLNKKHCIIFHLIFFFS---

---mvflplqtfqpihqpsknsefviyhyvisftslktlspvlvtivlhf*sliktvgni
lvkwirplkvvlplalkpllvnsskik*tlvnqnlpiks*qpfikivllqsfhsrv*vvs
spdfstxgldgnivvwhvkaleakn

Frame B:
iiqiinyirfvclfffylinkklkqinyxvnpckn*iknivlystsyfffp---

---wcfcrcklfnqstnhxktqss*ftit*splhh*klyrrcwlrlcstfnh*skrleif
w*ng*gl*rwccrwl*nlcs*tlpk*srpw*ikicr*kvnnrssklyyfnrsiqecrwcr
llisvplv*mvtlsygm*kxlklk

Frame C:
lskl*ti*dlcvcffft*sikn*nksiix*tlvkik*ktlyyipphifffh---

---GVFAVANFSTNPPTIXKLRVRNLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYS
GEMDKASEGGAAAGSETSARKLFQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVV
S*fqyxwfrw*hcrmacksx*s*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE238 (CFE238Q) /CSM/CF/CFE2-B/CFE238Q.Seq.d/ 827 0.0
VFI561 (VFI561Q) /CSM/VF/VFI5-C/VFI561Q.Seq.d/ 803 0.0
VFE696 (VFE696Q) /CSM/VF/VFE6-D/VFE696Q.Seq.d/ 803 0.0
VFE381 (VFE381Q) /CSM/VF/VFE3-D/VFE381Q.Seq.d/ 803 0.0
SLH610 (SLH610Q) /CSM/SL/SLH6-A/SLH610Q.Seq.d/ 803 0.0
SLC343 (SLC343Q) /CSM/SL/SLC3-B/SLC343Q.Seq.d/ 803 0.0
SFI444 (SFI444Q) /CSM/SF/SFI4-B/SFI444Q.Seq.d/ 803 0.0
FC-AL11 (FC-AL11Q) /CSM/FC/FC-AL/FC-AL11Q.Seq.d/ 803 0.0
FC-208 (FC-208Q) /CSM/CG/CG-FC/FC-208Q.Seq.d/ 803 0.0
AFM781 (AFM781Q) /CSM/AF/AFM7-D/AFM781Q.Seq.d/ 803 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD) mRNA, complete cds. 690 0.0 3
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 50 0.035 1
AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces. 50 0.035 1
AJ278435|AJ278435.1 Mus musculus Ranbp7 gene, Staf gene and Wee1 gene. 48 0.14 1
AC147244|AC147244.1 Mus musculus chromosome UNK clone RP23-462D5, WORKING DRAFT SEQUENCE, 6 unordered pieces. 48 0.14 1
AC124472|AC124472.4 Mus musculus BAC clone RP24-83E15 from chromosome 7, complete sequence. 48 0.14 1
CF974266|CF974266.1 PSU_nep1\G03 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence. 44 2.2 1
AC112789|AC112789.3 Mus musculus chromosome UNK clone RP23-151J21, WORKING DRAFT SEQUENCE, 55 unordered pieces. 42 8.6 1
AC073733|AC073733.2 Mus musculus clone RP23-251J11, WORKING DRAFT SEQUENCE, 14 ordered pieces. 42 8.6 1
AZ437716|AZ437716.1 1M0226O19F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0226O19 F, DNA sequence. 42 8.6 1
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK073919_1(AK073919|pid:none) Oryza sativa Japonica Group cDNA c... 56 5e-09
AP007155_21(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ... 56 1e-08
EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-relate... 51 8e-08
AJ720885_1(AJ720885|pid:none) Gallus gallus mRNA for hypothetica... 49 4e-07
CU633438_777(CU633438|pid:none) Podospora anserina genomic DNA c... 50 1e-06
EF678447_1(EF678447|pid:none) Picea sitchensis clone WS02921_O12... 45 4e-06
(P78774) RecName: Full=Actin-related protein 2/3 complex subunit... 52 1e-05
BC053229_1(BC053229|pid:none) Danio rerio actin related protein ... 42 2e-05
BC073411_1(BC073411|pid:none) Xenopus laevis MGC80877 protein, m... 42 2e-05
A84719(A84719) probable ARP2/3 protein complex subunit p41 [impo... 44 3e-05
protein update 2009. 5.13
PSORT

psg: 0.98 gvh: 0.76 alm: 0.44 top: 0.23 tms: 0.00 mit: 0.45 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: endoplasmic reticulum
8.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoplasmic
4.0 %: nuclear

>> prediction for CFE238 is exc

5' end seq. ID CFE238F
5' end seq.
>CFE238F.Seq
AATTATCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTTACTTAATCAA
TAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAATAAAAAACAT
TGTATTATATTCCACCTCATATTTTTTTTTTCCAT----------
Length of 5' end seq. 155
3' end seq. ID CFE238Z
3' end seq.
>CFE238Z.Seq
----------ATGGTGTTTTTGCCGTTGCAAACTTTTCAACCAATCCACCAACCATCNAA
AAACTCAGAGTTCGTAATTTACCATTACGTGATCTCCTTTACATCACTGAAAACTCTATC
GCCGGTGTTGGTTACGATTGTGCTCCACTTTTAATCACTAATCAAAACGGTTGGAAATAT
TCTGGTGAAATGGATAAGGCCTCTGAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCT
CGTAAACTCTTCCAAAATAAAGTAGACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTA
ACAACCGTTCATCAAAATTGTATTACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTC
GTCTCCTGATTTCAGTACCNCTGGTTTAGATGGTAACATTGTCGTATGGCATGTAAAAGC
NCTTGAAGCTAAAAAT
Length of 3' end seq. 426
Connected seq. ID CFE238P
Connected seq.
>CFE238P.Seq
AATTATCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTTACTTAATCAA
TAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAATAAAAAACAT
TGTATTATATTCCACCTCATATTTTTTTTTTCCAT----------ATGGTGTTTTTGCCG
TTGCAAACTTTTCAACCAATCCACCAACCATCNAAAAACTCAGAGTTCGTAATTTACCAT
TACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCTC
CACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTG
AAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAG
ACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTA
CTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCCTGATTTCAGTACCNCTGGT
TTAGATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAGCTAAAAAT
Length of connected seq. 581
Full length Seq ID -
Full length Seq. -
Length of full length seq. -