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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE215
Library CF
(Link to library)
Clone ID CFE215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16178-1
Original site URL
Representative seq. ID CFE215P
(Link to Original site)
Representative DNA sequence 
>CFE215 (CFE215Q) /CSM/CF/CFE2-A/CFE215Q.Seq.d/
AATTATCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTTACTTAATCAA
TAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAATAAAAAACAT
TGTATTATATTCCACCTCATATTTTTTTTTTCCATXXXXXXXXXXTAATTTACCATTACG
TGATCTCCTTTACATCACTGAAAACTCNATCGCCGGTGTTGGTTACGATTGTGCTCCACT
TTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTGAAGG
TGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAGACCT
TGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTACTTC
AATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTACTGATTTCAGTACCNCTGGTTTAG
ATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAGCTAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nypnyklykicvfvffllnq*kiktnql*xkpl*KLNKKHCIIFHLIFFFS---

---NLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYSGEMDKASEGGAAAGSETSARK
LFQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVVY*fqyxwfrw*hcrmacksx*
s*k
Translated Amino Acid sequence (All Frames) 
Frame A:
nypnyklykicvfvffllnq*kiktnql*xkpl*KLNKKHCIIFHLIFFFS---

---*ftit*splhh*klxrrcwlrlcstfnh*skrleifw*ng*gl*rwccrwl*nlcs*
tlpk*srpw*ikicr*kvnnrssklyyfnrsiqecrwcrllisvplv*mvtlsygm*kxl
klk

Frame B:
iiqiinyirfvclfffylinkklkqinyxvnpckn*iknivlystsyfffp---

---NLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYSGEMDKASEGGAAAGSETSARK
LFQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVVY*fqyxwfrw*hcrmacksx*
s*k

Frame C:
lskl*ti*dlcvcffft*sikn*nksiix*tlvkik*ktlyyipphifffh---

---iyhyvisftslktxspvlvtivlhf*sliktvgnilvkwirplkvvlplalkpllvn
sskik*tlvnqnlpiks*qpfikivllqsfhsrv*vvsstdfstxgldgnivvwhvkale
ak
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE215 (CFE215Q) /CSM/CF/CFE2-A/CFE215Q.Seq.d/                        698   0.0
CFE238 (CFE238Q) /CSM/CF/CFE2-B/CFE238Q.Seq.d/                        690   0.0
VFI561 (VFI561Q) /CSM/VF/VFI5-C/VFI561Q.Seq.d/                        682   0.0
VFE696 (VFE696Q) /CSM/VF/VFE6-D/VFE696Q.Seq.d/                        682   0.0
VFE381 (VFE381Q) /CSM/VF/VFE3-D/VFE381Q.Seq.d/                        682   0.0
SLH610 (SLH610Q) /CSM/SL/SLH6-A/SLH610Q.Seq.d/                        682   0.0
SLC343 (SLC343Q) /CSM/SL/SLC3-B/SLC343Q.Seq.d/                        682   0.0
SFI444 (SFI444Q) /CSM/SF/SFI4-B/SFI444Q.Seq.d/                        682   0.0
FC-AL11 (FC-AL11Q) /CSM/FC/FC-AL/FC-AL11Q.Seq.d/                      682   0.0
FC-208 (FC-208Q) /CSM/CG/CG-FC/FC-208Q.Seq.d/                         682   0.0
own update 2001.11.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD) mRNA, complete cds.   569   0.0    3
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.12   1
AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    48   0.12   1
CF974266|CF974266.1 PSU_nep1\G03 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence.    44   1.9    1
AC145061|AC145061.14 Medicago truncatula clone mth2-6a18, WORKING DRAFT SEQUENCE, 30 unordered pieces.    36   6.0    5
AZ785319|AZ785319.1 2M0029F12F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0029F12 F, DNA sequence.    42   7.7    1
AC073733|AC073733.2 Mus musculus clone RP23-251J11, WORKING DRAFT SEQUENCE, 14 ordered pieces.    42   7.7    1
AC112789|AC112789.3 Mus musculus chromosome UNK clone RP23-151J21, WORKING DRAFT SEQUENCE, 55 unordered pieces.    42   7.7    1
AZ437716|AZ437716.1 1M0226O19F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0226O19 F, DNA sequence.    42   7.7    1
AL968659|AL968659.1 Xenopus tropicalis EST, clone TGas143g21 5'.    42   7.7    1
dna update 2004. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK073919_1(AK073919|pid:none) Oryza sativa Japonica Group cDNA c...    50   1e-07
AP007155_21(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ...    50   3e-07
AJ720885_1(AJ720885|pid:none) Gallus gallus mRNA for hypothetica...    47   5e-07
EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-relate...    46   2e-06
EF678447_1(EF678447|pid:none) Picea sitchensis clone WS02921_O12...    45   3e-06
CU633438_777(CU633438|pid:none) Podospora anserina genomic DNA c...    46   9e-06
BC053229_1(BC053229|pid:none) Danio rerio actin related protein ...    42   2e-05
BC076887_1(BC076887|pid:none) Xenopus tropicalis actin related p...    41   3e-05
BC073411_1(BC073411|pid:none) Xenopus laevis MGC80877 protein, m...    40   3e-05
EU868834_1(EU868834|pid:none) Sus scrofa actin related protein 2...    40   9e-05
protein update 2009. 5.13
PSORT 

 psg: 0.97  gvh: 0.45  alm: 0.39  top: 0.27  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFE215 is cyt
5' end seq. ID CFE215F
5' end seq. 
>CFE215F.Seq
AATTATCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTTACTTAATCAA
TAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAATAAAAAACAT
TGTATTATATTCCACCTCATATTTTTTTTTTCCAT----------
Length of 5' end seq. 155
3' end seq. ID CFE215Z
3' end seq. 
>CFE215Z.Seq
----------TAATTTACCATTACGTGATCTCCTTTACATCACTGAAAACTCNATCGCCG
GTGTTGGTTACGATTGTGCTCCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTG
GTGAAATGGATAAGGCCTCTGAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTA
AACTCTTCCAAAATAAAGTAGACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAA
CCGTTCATCAAAATTGTATTACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCT
ACTGATTTCAGTACCNCTGGTTTAGATGGTAACATTGTCGTATGGCATGTAAAAGCNCTT
GAAGCTAAAAA
Length of 3' end seq. 361
Connected seq. ID CFE215P
Connected seq. 
>CFE215P.Seq
AATTATCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTTACTTAATCAA
TAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAATAAAAAACAT
TGTATTATATTCCACCTCATATTTTTTTTTTCCAT----------TAATTTACCATTACG
TGATCTCCTTTACATCACTGAAAACTCNATCGCCGGTGTTGGTTACGATTGTGCTCCACT
TTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTGAAGG
TGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAGACCT
TGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTACTTC
AATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTACTGATTTCAGTACCNCTGGTTTAG
ATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAGCTAAAAA
Length of connected seq. 516
Full length Seq ID -
Full length Seq. -
Length of full length seq. -