CFE131
Library CF
(Link to library)
Clone ID CFE131
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03177-1
Original site URL
Representative seq. ID CFE131Z
(Link to Original site)
Representative DNA sequence
>CFE131 (CFE131Q) /CSM/CF/CFE1-B/CFE131Q.Seq.d/
XXXXXXXXXXCCNCCCCCGCCNCCTGNNAATTAAAAAAAAGCCAANCCAAANATTAGGAC
CCNTTTANAANATTAAAANGNANAAAATCCGAANGGANGGGTTGAAATCCTATTTANATA
ANCCCCCCAGGAAATTTTTTAAAAAAAAAANACCCGAAAGGCCGAGGGAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---XPRXLXIKKKPXQXLGPXXXIKXXKIRXXGLKSYLXXPPRKFFKKKXPERPRE


Translated Amino Acid sequence (All Frames)
Frame A:
---XPRXLXIKKKPXQXLGPXXXIKXXKIRXXGLKSYLXXPPRKFFKKKXPERPRE


Frame B:
---xpaxxxlkksqxkx*dpfxxlkxxksexxg*npixixppgnflkkkxpkgrgk


Frame C:
---ppppxn*kkaxpxirtxlxx*xxxnpxgxveilfx*xpqeif*kkxtrkaegn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE131 (CFE131Q) /CSM/CF/CFE1-B/CFE131Q.Seq.d/ 127 6e-29

own update 2001. 6.13
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 697,085
Number of Sequences: 31773983
Number of extensions: 697085
Number of successful extensions: 209047
Number of sequences better than 10.0: 0
length of query: 172
length of database: U,076,595,219
effective HSP length: 21
effective length of query: 151
effective length of database: T,409,341,576
effective search space: 5497810577976
effective search space used: 5497810577976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 1.27
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 177,319,111
protein update 2009. 5.13
PSORT

psg: 0.82 gvh: 0.27 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.15 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for CFE131 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFE131Z
3' end seq.
>CFE131Z.Seq
----------CCNCCCCCGCCNCCTGNNAATTAAAAAAAAGCCAANCCAAANATTAGGAC
CCNTTTANAANATTAAAANGNANAAAATCCGAANGGANGGGTTGAAATCCTATTTANATA
ANCCCCCCAGGAAATTTTTTAAAAAAAAAANACCCGAAAGGCCGAGGGAAAC
Length of 3' end seq. 162
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -