>CFD893 (CFD893Q) /CSM/CF/CFD8-D/CFD893Q.Seq.d/
XXXXXXXXXXAGCTCGTGGTATTNATGTCCAACAAGTATCACTCGTTATCAANTTTGATT
TNCCAACCNACATTGAAAATTNCATTCATCGTATNGGTCGTTCAGGTNGTTTCGGTNGTA
AGGGTGTTGCCATCAACTTTATCNCTGACGCTGAAAGAGGTCAAATCGATGAATTATCCT
CGTCATTACAATACNTACATTGCCGNAATGCCACAAGACATTGGAAGTTTCCTCTAAACG
AGTTCCAAAAATGGTTTATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCATAGGGTTTAT
AAATCGNCCGCCCCCCTCCCTATCCAATACTCACACCACAACAACAT

---ARGIXVQQVSLVIXFDXPTXIENXIHRXGRSGXFGXKGVAINFIXDAERGQIDELSS
SLQYXHCRNATRHWKFPLNEFQKWFIVQLVPIW*gp*gl*ixrpppypiltpqqh

Frame A:
---ARGIXVQQVSLVIXFDXPTXIENXIHRXGRSGXFGXKGVAINFIXDAERGQIDELSS
SLQYXHCRNATRHWKFPLNEFQKWFIVQLVPIW*gp*gl*ixrpppypiltpqqh


Frame B:
---lvvxmsnkyhslsxlixqptlkixfivxvvqvvsvvrvlpstlsltlkevksmnypr
hyntyiaxmpqdigsfl*tsskngl*fswspfgeghrvyksxaplpiqyshhnn


Frame C:
---swyxcptsitryqx*fxnxh*kxhssyxsfrxfrx*gcchqlyx*r*krsnr*iilv
itixtlpxchktlevsskrvpkmvyssvgphlvraigfinrpppslsnthtttt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD893 (CFD893Q) /CSM/CF/CFD8-D/CFD893Q.Seq.d/                        597   e-170
SFA112 (SFA112Q) /CSM/SF/SFA1-A/SFA112Q.Seq.d/                        591   e-168
AFA258 (AFA258Q) /CSM/AF/AFA2-C/AFA258Q.Seq.d/                        591   e-168
VSJ133 (VSJ133Q) /CSM/VS/VSJ1-B/VSJ133Q.Seq.d/                        581   e-165
VSE235 (VSE235Q) /CSM/VS/VSE2-B/VSE235Q.Seq.d/                        581   e-165
VFN391 (VFN391Q) /CSM/VF/VFN3-D/VFN391Q.Seq.d/                        581   e-165
VFN268 (VFN268Q) /CSM/VF/VFN2-C/VFN268Q.Seq.d/                        581   e-165
VFL725 (VFL725Q) /CSM/VF/VFL7-B/VFL725Q.Seq.d/                        581   e-165
VFL705 (VFL705Q) /CSM/VF/VFL7-A/VFL705Q.Seq.d/                        581   e-165
VFL308 (VFL308Q) /CSM/VF/VFL3-A/VFL308Q.Seq.d/                        581   e-165

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds.   317   e-160  2
CF245450|CF245450.1 Fcylcold195 Fragilariopsis cylindrus SMART cDNA library (Clontech) Fragilariopsis cylindrus cDNA clone Antarctic 5', mRNA sequence.    90   5e-20  2
CF925067|IF42_MOUSE Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II), mRNA sequence.    58   2e-13  2
BG660011|BG660011.1 TgESTzya04e09.y1 TgVEG118 Tachyzoite cDNA Library Toxoplasma gondii cDNA clone TgESTzya04e09.y1 5' similar to SW:IF4A_SCHPO P47943 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    74   8e-12  2
BG660221|BG660221.1 TgESTzya05b08.y1 TgVEG118 Tachyzoite cDNA Library Toxoplasma gondii cDNA clone TgESTzya05b08.y1 5' similar to SW:IF4A_SCHPO P47943 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    74   8e-12  2
CB022555|CB022555.1 TgESTzyd21h10.y1 TgRH Tachyzoite Norm 7 cDNA Library Toxoplasma gondii cDNA clone TgESTzyd21h10.y1 5' similar to SW:IF4A_SCHPO P47943 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    74   1e-11  2
CB028184|CB028184.1 TgESTzyd49b10.y1 TgRH Tachyzoite Norm 7 cDNA Library Toxoplasma gondii cDNA clone TgESTzyd49b10.y1 5' similar to TR:O02494 O02494 TRANSLATION INITIATION FACTOR. ;, mRNA sequence.    74   1e-11  2
CB025494|CB025494.1 TgESTzyc78c04.y1 TgRH Tachyzoite Norm 5 cDNA Library Toxoplasma gondii cDNA clone TgESTzyc78c04.y1 5' similar to TR:O02494 O02494 TRANSLATION INITIATION FACTOR. ;, mRNA sequence.    74   1e-11  2
AJ320155|AJ320155.1 Toxoplasma gondii mRNA for eukaryotic translation initiation factor  4A (toif4A gene).    74   4e-11  2
CB300299|CB300299.1 TgESTzyf84f07.y1 TgME49 B7 Tachyzoite cDNA Library 2 Toxoplasma gondii cDNA clone TgESTzyf84f07.y1 5' similar to SW:IF4A_CANAL P87206 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    74   1e-09  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...    92   1e-23
AJ320155_1(AJ320155|pid:none) Toxoplasma gondii mRNA for eukaryo...    69   1e-12
(P27639) RecName: Full=Eukaryotic initiation factor 4A;         ...    71   1e-11
U13876_4(U13876|pid:none) Caenorhabditis elegans cosmid F57B9, c...    71   1e-11
DQ440212_1(DQ440212|pid:none) Aedes aegypti clone AET-2104 initi...    71   1e-11
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    70   2e-11
(A7TEF4) RecName: Full=ATP-dependent RNA helicase FAL1;         ...    70   3e-11
(Q5KN60) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    70   3e-11
(A5DVM3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    69   4e-11
AY167671_1(AY167671|pid:none) Pisum sativum DEAD box RNA helicas...    69   4e-11

 psg: 0.87  gvh: 0.42  alm: 0.48  top: 0.43  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFD893 is cyt

>CFD893Z.Seq
----------AGCTCGTGGTATTNATGTCCAACAAGTATCACTCGTTATCAANTTTGATT
TNCCAACCNACATTGAAAATTNCATTCATCGTATNGGTCGTTCAGGTNGTTTCGGTNGTA
AGGGTGTTGCCATCAACTTTATCNCTGACGCTGAAAGAGGTCAAATCGATGAATTATCCT
CGTCATTACAATACNTACATTGCCGNAATGCCACAAGACATTGGAAGTTTCCTCTAAACG
AGTTCCAAAAATGGTTTATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCATAGGGTTTAT
AAATCGNCCGCCCCCCTCCCTATCCAATACTCACACCACAACAACAT