>CFD882 (CFD882Q) /CSM/CF/CFD8-D/CFD882Q.Seq.d/
XXXXXXXXXXGTAACTCTGTTCAACGTAATGCCAAACCTGCTCAACAACATGCTAAACCA
GCTGCTCATACTGCTGCCAAACCAGTTCAACACAATGCTGCTCAACAACATGCTAAACCA
GCTGCCAAANCAGCCAAATTAACCAATGCCCAAAAATTACAACAAGAACACCAAAGACAA
GAAGCTCTCGCAAAACAACAAGCTCGTATTAGACAACAAAATCTTGTCAAACAAGCTGCC
CAAAAGAAACAAACCTCTCAACGTGCTGCCTCTAAAAATCAAGCTAGACCAGCAACTCAA
AAGAGAAATTAAATTTATTATTTAG

---NSVQRNAKPAQQHAKPAAHTAAKPVQHNAAQQHAKPAAKXAKLTNAQKLQQEHQRQE
ALAKQQARIRQQNLVKQAAQKKQTSQRAASKNQARPATQKRN*iyyl

Frame A:
---*lcst*cqtcsttc*tscsyccqtsstqccsttc*tscqxsqinqcpkittrtpktr
ssrkttssy*ttkscqtscpketnlstccl*kss*tsnskeklnllf


Frame B:
---NSVQRNAKPAQQHAKPAAHTAAKPVQHNAAQQHAKPAAKXAKLTNAQKLQQEHQRQE
ALAKQQARIRQQNLVKQAAQKKQTSQRAASKNQARPATQKRN*iyyl


Frame C:
---tlfnvmpnllnnmlnqllillpnqfntmllnnmlnqlpxqpn*pmpknynkntkdkk
lsqnnklvldnkilsnklpkrnkplnvlplkikldqqlkreikfii*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD882 (CFD882Q) /CSM/CF/CFD8-D/CFD882Q.Seq.d/                        618   e-176
SLB726 (SLB726Q) /CSM/SL/SLB7-B/SLB726Q.Seq.d/                        565   e-160
SLB567 (SLB567Q) /CSM/SL/SLB5-C/SLB567Q.Seq.d/                        565   e-160
SLB434 (SLB434Q) /CSM/SL/SLB4-B/SLB434Q.Seq.d/                        565   e-160
SLA881 (SLA881Q) /CSM/SL/SLA8-D/SLA881Q.Seq.d/                        565   e-160
SLA669 (SLA669Q) /CSM/SL/SLA6-C/SLA669Q.Seq.d/                        565   e-160
SLA435 (SLA435Q) /CSM/SL/SLA4-B/SLA435Q.Seq.d/                        565   e-160
SLA116 (SLA116Q) /CSM/SL/SLA1-A/SLA116Q.Seq.d/                        565   e-160
SHJ113 (SHJ113Q) /CSM/SH/SHJ1-A/SHJ113Q.Seq.d/                        565   e-160
SFL469 (SFL469Q) /CSM/SF/SFL4-C/SFL469Q.Seq.d/                        565   e-160

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   565   e-157  3
X57149|X57149.1 D.discoideum EB4 gene for prespore vesicle protein.   565   e-157  3
M11028|M11028.1 Slime mold (D.discoideum) prespore EB4 gene.       58   8e-05  1
AZ534269|AZ534269.1 ENTBS71TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.057  2
AL831706|AL831706.19 Mouse DNA sequence from clone RP23-74B12 on chromosome 2.    46   0.29   1
Z93698|Z93698.1 O.cingulatus 16S rRNA gene, partial.               38   0.55   2
AC101979|AC101979.4 Mus musculus clone RP24-338A7, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   0.76   2
AC139926|AC139926.7 Rattus norvegicus clone CH230-184K21, WORKING DRAFT SEQUENCE, 46 unordered pieces.    44   1.2    1
BY688255|BY688255.1 Mus musculus stroma cell cDNA, RIKEN full-length enriched library, clone:I320028C17, 3' end partial sequence.    44   1.2    1
AR320061|AR320061.1 Sequence 2611 from patent US 6562958.          44   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S28358(S28358;S20090) prespore vesicle protein - slime mold (Dic...   110   1e-23
(P08798) RecName: Full=Prespore vesicle protein;          Short=...   110   1e-23
(Q54G96) RecName: Full=Uncharacterized protein DDB_G0290301;           38   0.092
U32470_3(U32470|pid:none) Haemophilus influenzae tolQRAB gene cl...    38   0.12
AE017194_2199(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    37   0.16
AP008207_3128(AP008207|pid:none) Oryza sativa (japonica cultivar...    37   0.20
AE014296_2972(AE014296|pid:none) Drosophila melanogaster chromos...    37   0.20
AP003289_17(AP003289|pid:none) Oryza sativa Japonica Group genom...    37   0.20
BT012673_1(BT012673|pid:none) Drosophila melanogaster SD07102 fu...    37   0.20
AY052115_1(AY052115|pid:none) Drosophila melanogaster SD06557 fu...    37   0.20

 psg: 0.58  gvh: 0.31  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for CFD882 is nuc

>CFD882Z.Seq
----------GTAACTCTGTTCAACGTAATGCCAAACCTGCTCAACAACATGCTAAACCA
GCTGCTCATACTGCTGCCAAACCAGTTCAACACAATGCTGCTCAACAACATGCTAAACCA
GCTGCCAAANCAGCCAAATTAACCAATGCCCAAAAATTACAACAAGAACACCAAAGACAA
GAAGCTCTCGCAAAACAACAAGCTCGTATTAGACAACAAAATCTTGTCAAACAAGCTGCC
CAAAAGAAACAAACCTCTCAACGTGCTGCCTCTAAAAATCAAGCTAGACCAGCAACTCAA
AAGAGAAATTAAATTTATTATTTAG