CFD881
Library CF
(Link to library)
Clone ID CFD881
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14953-1
Original site URL
Representative seq. ID CFD881F
(Link to Original site)
Representative DNA sequence
>CFD881 (CFD881Q) /CSM/CF/CFD8-D/CFD881Q.Seq.d/
AAATGTAATGATACATTAAAACAGACATTTATAATATGATTAATGTTTTAATTAATAAAT
CAAGTAAATTAGTAAATGGTGTTGATAGTTGTATTAATAACAAAACCATAAGATTGTTTT
GTTCATCATCGTCAACCAATCAAGTTAACAAAACACCATTTAATTTGTGTATTATTGGTA
GTGGACCAGCTGGTTTATATACAGCTGCAAAAGTTCATAGACAAATACCACATGCAAATA
TTACAATTTTAGAAAAATTACCATATCCATTTGGATTAGTTAGATCAGGTATTTCACCAG
ATCATCAAAATGAAAAGAAAGTAAAAAATACATTAGAAAAAGTATTATTAGAACATCCAC
ATCAAATTCAATTCATTGGTAATGTTGATATTGAAAAGGATATAAAATTTCAATATATTA
AAGATAATTTTCATGCAGTTGTATTAGCATGTGGCATTGAAGGTGATAAAAAGTTGGGCA
TACCAGGTGAATTAACTTTAAAGAATGTTTATTTCGCTCGTGAATTCATTGGTTGGTTAA
ATGGTAATCTAAAAGATCAACATAAACAATTTGATCTTTCAAATGAGAATTTAGCAATCG
TTGGTCAAGGTAATGTAGCTTTAGATGTAGCTAGATTACTCTTGAAAAAAAAXXXXXXXX
XX
sequence update 2001. 6. 1
Translated Amino Acid sequence
m**YIKTDIYNMINVLINKSSKLVNGVDSCINNKTIRLFCSSSSTNQVNKTPFNLCIIGS
GPAGLYTAAKVHRQIPHANITILEKLPYPFGLVRSGISPDHQNEKKVKNTLEKVLLEHPH
QIQFIGNVDIEKDIKFQYIKDNFHAVVLACGIEGDKKLGIPGELTLKNVYFAREFIGWLN
GNLKDQHKQFDLSNENLAIVGQGNVALDVARLLLKK---


Translated Amino Acid sequence (All Frames)
Frame A:
kcndtlkqtfii*lmf*linqvn**mvlivvlitkp*dcfvhhrqpikltkhhlicvllv
vdqlvyiqlqkfidkyhmqilqf*knyhihld*ldqvfhqiikmkrk*kih*kkyy*nih
ikfnslvmlilkri*nfnilkiifmqly*hvalkvikswayqvn*l*rmfislvnslvg*
mvi*kininnlifqmri*qslvkvm*l*m*ldys*kk---


Frame B:
nvmih*nrhl*yd*cfn**ik*iskwc**ly**qnhkivlfiivnqss*qnti*fvyyw*
wtswfiysckss*tnttckyynfrkitisiwis*iryftrssk*keskkyirksiirtst
snsihw*c*y*kgykisiy*r*fscscismwh*r**kvghtr*infkeclfrs*ihwlvk
w*skrst*ti*sfk*efsnrwsr*csfrcs*itlek---


Frame C:
m**YIKTDIYNMINVLINKSSKLVNGVDSCINNKTIRLFCSSSSTNQVNKTPFNLCIIGS
GPAGLYTAAKVHRQIPHANITILEKLPYPFGLVRSGISPDHQNEKKVKNTLEKVLLEHPH
QIQFIGNVDIEKDIKFQYIKDNFHAVVLACGIEGDKKLGIPGELTLKNVYFAREFIGWLN
GNLKDQHKQFDLSNENLAIVGQGNVALDVARLLLKK---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD881 (CFD881Q) /CSM/CF/CFD8-D/CFD881Q.Seq.d/ 607 e-173
AFK756 (AFK756Q) /CSM/AF/AFK7-C/AFK756Q.Seq.d/ 603 e-171
VFB202 (VFB202Q) /CSM/VF/VFB2-A/VFB202Q.Seq.d/ 601 e-171
AFD280 (AFD280Q) /CSM/AF/AFD2-D/AFD280Q.Seq.d/ 40 0.042
AFD188 (AFD188Q) /CSM/AF/AFD1-D/AFD188Q.Seq.d/ 40 0.042
VHN796 (VHN796Q) /CSM/VH/VHN7-D/VHN796Q.Seq.d/ 38 0.17
VHK389 (VHK389Q) /CSM/VH/VHK3-D/VHK389Q.Seq.d/ 36 0.65
VHI511 (VHI511Q) /CSM/VH/VHI5-A/VHI511Q.Seq.d/ 36 0.65
VFO374 (VFO374Q) /CSM/VF/VFO3-D/VFO374Q.Seq.d/ 36 0.65
VFN680 (VFN680Q) /CSM/VF/VFN6-D/VFN680Q.Seq.d/ 36 0.65

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP003360|AP003360.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 3/9. 32 6e-04 14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 0.001 14
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2. 34 0.001 12
AL845500|AL845500.6 Mouse DNA sequence from clone RP23-221K3 on chromosome 2. 38 0.001 9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 32 0.003 15
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 34 0.003 13
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.004 11
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 32 0.005 21
AC027024|AC027024.3 Homo sapiens chromosome 8 clone RP11-583F20 map 8, WORKING DRAFT SEQUENCE, 38 unordered pieces. 36 0.020 7
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P4. 32 0.021 12
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY947548_1(AY947548|pid:none) Aedes aegypti adrenodoxin reductas... 152 1e-35
BC084341_1(BC084341|pid:none) Xenopus laevis hypothetical LOC495... 150 2e-35
AP007159_321(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 148 1e-34
DQ013245_1(DQ013245|pid:none) Anopheles gambiae adrenodoxin redu... 146 6e-34
AY892003_1(AY892003|pid:none) Synthetic construct Homo sapiens c... 145 1e-33
(P22570) RecName: Full=NADPH:adrenodoxin oxidoreductase, mitocho... 145 1e-33
A40487(A40487;B40487;A36482) ferredoxin-NADP reductase (EC 1.18.... 145 1e-33
AC158504_35(AC158504|pid:none) Medicago truncatula clone mth2-15... 144 2e-33
BC057146_1(BC057146|pid:none) Mus musculus ferredoxin reductase,... 144 3e-33
BC071268_1(BC071268|pid:none) Mus musculus ferredoxin reductase,... 143 4e-33
protein update 2009. 5.13
PSORT

psg: 0.80 gvh: 0.50 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.15
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: peroxisomal

>> prediction for CFD881 is cyt

5' end seq. ID CFD881F
5' end seq.
>CFD881F.Seq
AAATGTAATGATACATTAAAACAGACATTTATAATATGATTAATGTTTTAATTAATAAAT
CAAGTAAATTAGTAAATGGTGTTGATAGTTGTATTAATAACAAAACCATAAGATTGTTTT
GTTCATCATCGTCAACCAATCAAGTTAACAAAACACCATTTAATTTGTGTATTATTGGTA
GTGGACCAGCTGGTTTATATACAGCTGCAAAAGTTCATAGACAAATACCACATGCAAATA
TTACAATTTTAGAAAAATTACCATATCCATTTGGATTAGTTAGATCAGGTATTTCACCAG
ATCATCAAAATGAAAAGAAAGTAAAAAATACATTAGAAAAAGTATTATTAGAACATCCAC
ATCAAATTCAATTCATTGGTAATGTTGATATTGAAAAGGATATAAAATTTCAATATATTA
AAGATAATTTTCATGCAGTTGTATTAGCATGTGGCATTGAAGGTGATAAAAAGTTGGGCA
TACCAGGTGAATTAACTTTAAAGAATGTTTATTTCGCTCGTGAATTCATTGGTTGGTTAA
ATGGTAATCTAAAAGATCAACATAAACAATTTGATCTTTCAAATGAGAATTTAGCAATCG
TTGGTCAAGGTAATGTAGCTTTAGATGTAGCTAGATTACTCTTGAAAAAAAA--------
--
Length of 5' end seq. 652
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -