>CFD856 (CFD856Q) /CSM/CF/CFD8-C/CFD856Q.Seq.d/
ATCATTCGGTCGTCGTTTCAGTGTAATTAAAAAAAAAGAATGTCAACAACCGAAAATCAA
CAAGCAACCATTGAAAATAACCAATCATTGGAAACAGAAAATAATAATAATAATAATGAT
GAAACTTGTAAAAAAAGAACCTTAGAAGAAACTGAAAATAAAAATAAAAACTTTGTTAAT
AAAAAATTAAGAAAAGAACAAAAAAAAAAGGAACCAAAGGAAACCAAAAACCAAAAAXXX
XXXXXXX

iirssfqcn*KKRMSTTENQQATIENNQSLETENNNNNNDETCKKRTLEETENKNKNFVN
KKLRKEQKKKEPKETKNQ---

Frame A:
iirssfqcn*KKRMSTTENQQATIENNQSLETENNNNNNDETCKKRTLEETENKNKNFVN
KKLRKEQKKKEPKETKNQ---


Frame B:
sfgrrfsvikkkecqqpkinkqplkitnhwkqkiiiiimmklvkkep*kklkikiktlli
kn*eknkkkrnqrkpktk---


Frame C:
hsvvvsv*lkkknvnnrkstsnh*k*piignrk*******nl*kknlrrn*k*k*klc**
kikkrtkkkgtkgnqkpk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD856 (CFD856Q) /CSM/CF/CFD8-C/CFD856Q.Seq.d/                        143   1e-33
SSB776 (SSB776Q) /CSM/SS/SSB7-D/SSB776Q.Seq.d/                         36   0.23
VSJ347 (VSJ347Q) /CSM/VS/VSJ3-B/VSJ347Q.Seq.d/                         34   0.92
SHJ204 (SHJ204Q) /CSM/SH/SHJ2-A/SHJ204Q.Seq.d/                         34   0.92
SHF616 (SHF616Q) /CSM/SH/SHF6-A/SHF616Q.Seq.d/                         34   0.92
CHS165 (CHS165Q) /CSM/CH/CHS1-C/CHS165Q.Seq.d/                         34   0.92
CHR638 (CHR638Q) /CSM/CH/CHR6-B/CHR638Q.Seq.d/                         34   0.92
CHI666 (CHI666Q) /CSM/CH/CHI6-C/CHI666Q.Seq.d/                         34   0.92
CHH233 (CHH233Q) /CSM/CH/CHH2-B/CHH233Q.Seq.d/                         34   0.92
CHG860 (CHG860Q) /CSM/CH/CHG8-C/CHG860Q.Seq.d/                         34   0.92

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117580|AC117580.3 Mus musculus clone RP23-37D14, WORKING DRAFT SEQUENCE, 9 ordered pieces.    34   0.033  2
BM544190|BM544190.1 AGENCOURT_6490557 NIH_MGC_125 Homo sapiens cDNA clone IMAGE:5587681 5', mRNA sequence.    46   0.22   1
AC021736|AC021736.9 Homo sapiens chromosome 8, clone RP11-115J16, complete sequence.    44   0.87   1
AC094310|AC094310.10 Rattus norvegicus clone CH230-3G6, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44   0.87   1
AX045227|AX045227.1 Sequence 69 from Patent WO0066154.             44   0.87   1
AC111747|AC111747.4 Rattus norvegicus clone CH230-150F12, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   0.87   1
AC126077|AC126077.4 Rattus norvegicus clone CH230-142H21, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   0.87   1
Z21370|Z21370.1 H. sapiens putatively transcribed partial sequence; UK-HGMP sequence ID AAAEAOA; single read.    44   0.87   1
AC097422|AC097422.6 Rattus norvegicus clone CH230-20B11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   0.87   1
BH281895|BH281895.1 CH230-191L24.TJB CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-191L24, DNA sequence.    44   0.87   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 130,458,891

 psg: 0.55  gvh: 0.05  alm: 0.78  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for CFD856 is nuc

>CFD856F.Seq
ATCATTCGGTCGTCGTTTCAGTGTAATTAAAAAAAAAGAATGTCAACAACCGAAAATCAA
CAAGCAACCATTGAAAATAACCAATCATTGGAAACAGAAAATAATAATAATAATAATGAT
GAAACTTGTAAAAAAAGAACCTTAGAAGAAACTGAAAATAAAAATAAAAACTTTGTTAAT
AAAAAATTAAGAAAAGAACAAAAAAAAAAGGAACCAAAGGAAACCAAAAACCAAAAA---
-------