>CFD847 (CFD847Q) /CSM/CF/CFD8-B/CFD847Q.Seq.d/
ATCTTTTTTNTATATATAAATAAATTAAAATGGTTGGATTTGAAGATCATATCGCAGCTA
TCACAAGAAACTATCAAGTTAACCCACGTTTAGATTATAGAACTGTTACAGCAGTAAATG
GTCCACTCGTTATTTTAGATAATATCAGAGGTCCAAAATTCTCTGAAATTGTAACTTTAA
CTTTAGGTGATGGTACTCAAAGAAAAGGTCAAGTTTTGGAAATCCAAGGTAAAAGAGCTG
TTGTACAAGTTTTCGAAGGTACAATTGGTATTGATGCCAAACACACTCGTTGTGAATTCT
CTGGTGATATTTTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTT
CAGGTAAACCAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAG
GTCAACCAATCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCT
CTGCTATTGATACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTTCTCTGCTG
CAGGTTTACCACACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTTAGTTAAAA
AATCAGGTAAAGGTGTTATTGATGATCATGAAGATAATTTTGCTAXXXXXXXXXXTTAAA
ATTTTTAGAACGTTTNGAATCTAGCTTTGTCGGTCAAAACCATTATGAAAATCGTGATTT
CTTTGNTTCATTGGCTCCTTGGTTGGTCTTTATTAAGAACTTTCCCAAGCAATCTCCTCA
AACGTATC

lfxiyk*IKMVGFEDHIAAITRNYQVNPRLDYRTVTAVNGPLVILDNIRGPKFSEIVTLT
LGDGTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGS
GKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARGQKIPIFSAA
GLPHNEIAAQICRQAGLVKKSGKGVIDDHEDNFA---

---LKFLERXESSFVGQNHYENRDFFXSLAPWLVFIKNFPKQSPQTY

Frame A:
iffxyinklkwldlkiisqlsqetiklthv*iiellqq*mvhslf*iisevqnslkl*l*
l*vmvlkekvkfwkskvkellykfskvqlvlmpntlvvnslvif*rcqyqkih*vvfsmv
qvnqlikvqmf*lknt*ifkvnqsihqlefthkk*fklvslllil*iqllvvkrfqfsll
qvyhtmklplkfvvklv*lknqvkvllmimkiill---

---LKFLERXESSFVGQNHYENRDFFXSLAPWLVFIKNFPKQSPQTY

Frame B:
sfxyi*in*ngwi*rsyrsyhkklss*ptfrl*ncysskwstryfr*yqrskil*ncnfn
fr*wyskkrssfgnpr*kscctsfrrynwy*cqthsl*ilw*yfkdasirrfirsyfqwf
r*ts**rskcfs*rilrysrstnqsis*slptrndsnwylcy*yyefncswskdsnflcc
rfttq*ncrsnlssswfs*kir*rcy**s*r*fc---

---*nf*nvxnlalsvktimkivislxhwllgwsllrtfpsnllkri

Frame C:
lfxiyk*IKMVGFEDHIAAITRNYQVNPRLDYRTVTAVNGPLVILDNIRGPKFSEIVTLT
LGDGTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGS
GKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARGQKIPIFSAA
GLPHNEIAAQICRQAGLVKKSGKGVIDDHEDNFA---

---kifrtfxi*lcrskpl*ks*flxfigslvgly*elsqaissnv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD847 (CFD847Q) /CSM/CF/CFD8-B/CFD847Q.Seq.d/                       1485   0.0
AFO705 (AFO705Q) /CSM/AF/AFO7-A/AFO705Q.Seq.d/                       1273   0.0
AFH533 (AFH533Q) /CSM/AF/AFH5-B/AFH533Q.Seq.d/                       1273   0.0
CFF864 (CFF864Q) /CSM/CF/CFF8-C/CFF864Q.Seq.d/                       1265   0.0
AFB239 (AFB239Q) /CSM/AF/AFB2-B/AFB239Q.Seq.d/                       1245   0.0
AFF375 (AFF375Q) /CSM/AF/AFF3-D/AFF375Q.Seq.d/                       1235   0.0
SLA124 (SLA124Q) /CSM/SL/SLA1-A/SLA124Q.Seq.d/                       1215   0.0
VFI477 (VFI477Q) /CSM/VF/VFI4-D/VFI477Q.Seq.d/                       1201   0.0
SFJ582 (SFJ582Q) /CSM/SF/SFJ5-D/SFJ582Q.Seq.d/                       1193   0.0
AHE621 (AHE621Q) /CSM/AH/AHE6-A/AHE621Q.Seq.d/                       1193   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.   618   0.0    6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   618   0.0    10
U63317|U63317.1 Dictyostelium discoideum vacuolar H+ ATPase B subunit (dvacB) mRNA, partial cds.   121   1e-45  2
BE581425|BE581425.1 kq45f06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to gb:L35249 VACUOLAR ATP SYNTHASE SUBUNIT B, BRAIN ISOFORM (HUMAN);, mRNA sequence.    64   4e-43  5
BI509187|BI509187.1 BB170005B20H04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170005B20H04 5', mRNA sequence.   155   2e-42  3
CD523888|CD523888.1 kw18c01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:VATB_CAEEL Q19626 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT B ;, mRNA sequence.    80   1e-39  5
BE579096|BE579096.1 kq22c06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F20B6.2 CE04424 VACUOLAR ATP SYNTHASE ;, mRNA sequence.    64   1e-37  5
BI511137|BI511137.1 BB160004B20C03 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160004B20C03 5', mRNA sequence.   137   4e-37  3
BE643432|BE643432.1 Cri2_8_M20_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_8_M20 5', mRNA sequence.   137   1e-36  3
CD525363|CD525363.1 kw02d03.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:VATB_CAEEL Q19626 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT B ;, mRNA sequence.    76   2e-36  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NU1) RecName: Full=V-type proton ATPase subunit B;          ...   409   e-113
AY641405_1(AY641405|pid:none) Entamoeba histolytica vacuolar ATP...   335   1e-90
AF189779_1(AF189779|pid:none) Carcinus maenas vacuolar ATP synth...   315   1e-84
EU727173_1(EU727173|pid:none) Bombyx mori strain NB vacuolar ATP...   314   2e-84
(P31410) RecName: Full=V-type proton ATPase subunit B;          ...   313   4e-84
AF037468_1(AF037468|pid:none) Culex pipiens quinquefasciatus B s...   312   9e-84
AY197611_1(AY197611|pid:none) Artemia franciscana vacuolar proto...   311   2e-83
AF472615_1(AF472615|pid:none) Danio rerio vacuolar-type H+ trans...   305   1e-81
BC115214_1(BC115214|pid:none) Danio rerio ATPase, H+ transportin...   305   1e-81
BC062202_1(BC062202|pid:none) Mus musculus ATPase, H+ transporti...   304   2e-81

 psg: 0.75  gvh: 0.36  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFD847 is cyt

>CFD847F.Seq
ATCTTTTTTNTATATATAAATAAATTAAAATGGTTGGATTTGAAGATCATATCGCAGCTA
TCACAAGAAACTATCAAGTTAACCCACGTTTAGATTATAGAACTGTTACAGCAGTAAATG
GTCCACTCGTTATTTTAGATAATATCAGAGGTCCAAAATTCTCTGAAATTGTAACTTTAA
CTTTAGGTGATGGTACTCAAAGAAAAGGTCAAGTTTTGGAAATCCAAGGTAAAAGAGCTG
TTGTACAAGTTTTCGAAGGTACAATTGGTATTGATGCCAAACACACTCGTTGTGAATTCT
CTGGTGATATTTTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTT
CAGGTAAACCAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAG
GTCAACCAATCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCT
CTGCTATTGATACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTTCTCTGCTG
CAGGTTTACCACACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTTAGTTAAAA
AATCAGGTAAAGGTGTTATTGATGATCATGAAGATAATTTTGCTA----------

>CFD847Z.Seq
----------TTAAAATTTTTAGAACGTTTNGAATCTAGCTTTGTCGGTCAAAACCATTA
TGAAAATCGTGATTTCTTTGNTTCATTGGCTCCTTGGTTGGTCTTTATTAAGAACTTTCC
CAAGCAATCTCCTCAAACGTATC

>CFD847P.Seq
ATCTTTTTTNTATATATAAATAAATTAAAATGGTTGGATTTGAAGATCATATCGCAGCTA
TCACAAGAAACTATCAAGTTAACCCACGTTTAGATTATAGAACTGTTACAGCAGTAAATG
GTCCACTCGTTATTTTAGATAATATCAGAGGTCCAAAATTCTCTGAAATTGTAACTTTAA
CTTTAGGTGATGGTACTCAAAGAAAAGGTCAAGTTTTGGAAATCCAAGGTAAAAGAGCTG
TTGTACAAGTTTTCGAAGGTACAATTGGTATTGATGCCAAACACACTCGTTGTGAATTCT
CTGGTGATATTTTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTT
CAGGTAAACCAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAG
GTCAACCAATCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCT
CTGCTATTGATACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTTCTCTGCTG
CAGGTTTACCACACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTTAGTTAAAA
AATCAGGTAAAGGTGTTATTGATGATCATGAAGATAATTTTGCTA----------TTAAA
ATTTTTAGAACGTTTNGAATCTAGCTTTGTCGGTCAAAACCATTATGAAAATCGTGATTT
CTTTGNTTCATTGGCTCCTTGGTTGGTCTTTATTAAGAACTTTCCCAAGCAATCTCCTCA
AACGTATC