CFD838
Library CF
(Link to library)
Clone ID CFD838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFD838P
(Link to Original site)
Representative DNA sequence
>CFD838 (CFD838Q) /CSM/CF/CFD8-B/CFD838Q.Seq.d/
ATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCT
CGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCA
GGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGA
GCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAA
GTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGA
TCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAA
GTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGT
GCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATG
AGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATC
ATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGT
GTCACCAGAXXXXXXXXXXCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAG
CTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTC
CAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATG
AAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAG
TTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTC
AAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAANCNCTA
TGTGTATTGGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
IILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRG
AFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKE
VPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPI
ISGCYNTMGQTSENVAERFGVTR---

---AERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFA
SQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVXXMCIG


Translated Amino Acid sequence (All Frames)
Frame A:
IILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRG
AFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKE
VPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPI
ISGCYNTMGQTSENVAERFGVTR---

---rrkigsqg*igfrsfcccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfc
fssilql*gfgfgyeqs*skwlwyrfrssircywcpsngyhfkritss*r*iwcxxyvyw

Frame B:
*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklkee
hskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqrk
yhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriqs
lvvvttlwvkplkmsqsvlvsp---

---AERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFA
SQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVXXMCIG

Frame C:
nitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*krs
iqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftkgs
tmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgsnh
*wllqhygsnl*kcrrafwchq---

---pkdwvsrlnwfs*llllsvsnhplwvlvqplqfqpp*nklvsplkistflksmklll
lkhftvvrfwvwi*tkliqmalvsl*vih*vllvpvkwlpfqenyivvkvnmv*xlcvlv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD838 (CFD838Q) /CSM/CF/CFD8-B/CFD838Q.Seq.d/ 1855 0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/ 1207 0.0
SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/ 1207 0.0
SFD243 (SFD243Q) /CSM/SF/SFD2-B/SFD243Q.Seq.d/ 1207 0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/ 1207 0.0
CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/ 1207 0.0
CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/ 1207 0.0
AFJ735 (AFJ735Q) /CSM/AF/AFJ7-B/AFJ735Q.Seq.d/ 1207 0.0
AFE623 (AFE623Q) /CSM/AF/AFE6-A/AFE623Q.Seq.d/ 1207 0.0
AFA805 (AFA805Q) /CSM/AF/AFA8-A/AFA805Q.Seq.d/ 1207 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 989 0.0 8
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence. 40 6e-12 5
CF213585|CF213585.1 CGF1000794_F07 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IF_F07 5', mRNA sequence. 60 3e-10 3
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 1e-09 4
CD007738|CD007738.1 VVB078G11_334604 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB078G11 5, mRNA sequence. 60 2e-08 2
CD716621|CD716621.1 VVB129E11_405541 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB129E11 5, mRNA sequence. 60 2e-08 2
CD008871|CD008871.1 VVB097G11_339261 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB097G11 5, mRNA sequence. 60 2e-08 2
CD719494|CD719494.1 VVB161G09_410895 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB161G09 5, mRNA sequence. 60 2e-08 2
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence. 40 3e-08 4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 5e-08 3
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 386 e-106
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 202 2e-50
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 202 2e-50
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 201 4e-50
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 199 2e-49
BT051821_1(BT051821|pid:none) Medicago truncatula clone MTYF5_F6... 196 1e-48
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789. 194 4e-48
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 194 5e-48
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15... 193 8e-48
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 192 1e-47
protein update 2009. 5.13
PSORT

psg: 0.61 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.37 mip: 0.05
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CFD838 is nuc

5' end seq. ID CFD838F
5' end seq.
>CFD838F.Seq
ATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCT
CGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCA
GGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGA
GCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAA
GTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGA
TCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAA
GTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGT
GCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATG
AGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATC
ATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGT
GTCACCAGA----------
Length of 5' end seq. 609
3' end seq. ID CFD838Z
3' end seq.
>CFD838Z.Seq
----------CGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTG
CTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCT
TAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTG
CTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAA
ATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTA
CCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAANCNCTATGTGTATTG
GTA
Length of 3' end seq. 353
Connected seq. ID CFD838P
Connected seq.
>CFD838P.Seq
ATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCT
CGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCA
GGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGA
GCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAA
GTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGA
TCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAA
GTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGT
GCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATG
AGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATC
ATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGGT
GTCACCAGA----------CGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAG
CTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTC
CAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATG
AAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAG
TTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTC
AAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAANCNCTA
TGTGTATTGGTA
Length of connected seq. 962
Full length Seq ID -
Full length Seq. -
Length of full length seq. -