>CFD831 (CFD831Q) /CSM/CF/CFD8-B/CFD831Q.Seq.d/
ATTTAATAATATAGAATGTCAGACCAAGAGTATTATAAAGATTTTAGTAATAAAATTATT
AAAGAAAGAAAAAAGAATATTGAAAATGATGAATCAAAAGTGATTTATTTTACATTAGCA
GGTAGTCATTCATTTAATTTAAATGTTGAAAGTAGTGATAAGGATTATTTTGGTGTTTAT
TGTTCAGATATTGATGATATATTAGTTGGTGATATTAAACAACCAATTATTGATAGTCAT
GAACCAGATGATTATATTTTATTTGAAGTTGAAAGATTTTGTGAACTTTTATATAAAGGT
AATCCAAAATTGATAGAACCAATGTTTACCACAAGATTTTGTTACAAATCACCAATTTGG
GAACAACTTTTCTTAAATAGAAAAGAATTAATTAGTCAATCTGCAATTCAACATTATTTA
AGTTATAGTAAATCTCAAATGGGTGATGCATCAAAATTAATCTTTAAAAACGGCTCACCA
ATTTCAATTGAATGTGGTGGGTCAGAACAAGAGGAAGAAGATAAAAAGAAATTACTATTA
TCAATGATTAATAGTAATCATAGTTATTGTAAAAAGTTATATCATACCTATAGATTGXXX
XXXXXXX

i**YRMSDQEYYKDFSNKIIKERKKNIENDESKVIYFTLAGSHSFNLNVESSDKDYFGVY
CSDIDDILVGDIKQPIIDSHEPDDYILFEVERFCELLYKGNPKLIEPMFTTRFCYKSPIW
EQLFLNRKELISQSAIQHYLSYSKSQMGDASKLIFKNGSPISIECGGSEQEEEDKKKLLL
SMINSNHSYCKKLYHTYR---

Frame A:
i**YRMSDQEYYKDFSNKIIKERKKNIENDESKVIYFTLAGSHSFNLNVESSDKDYFGVY
CSDIDDILVGDIKQPIIDSHEPDDYILFEVERFCELLYKGNPKLIEPMFTTRFCYKSPIW
EQLFLNRKELISQSAIQHYLSYSKSQMGDASKLIFKNGSPISIECGGSEQEEEDKKKLLL
SMINSNHSYCKKLYHTYR---


Frame B:
fnniecqtksiikilvikllkkekrilkmmnqk*filh*qvvihli*mlkvviriilvfi
vqilmiy*lvilnnqllivmnqmiifylklkdfvnfyikviqn**nqclpqdfvtnhqfg
nnfs*iekn*lvnlqfnii*vivnlkwvmhqn*slktahqfqlnvvgqnkrkkikrnyyy
q*liviivivksyiipid---


Frame C:
lii*nvrprvl*rf***ny*rkkkey*k**iksdlfyisr*sfi*fkc*k***glfwcll
fry**yisw*y*ttny**s*tr*lyfi*s*kil*tfi*r*skidrtnvyhkillqitnlg
ttflk*krin*sicnstlfkl**isng*cikinl*krltnfn*mwwvrtrgrr*keitii
nd***s*ll*kvisyl*i---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD831 (CFD831Q) /CSM/CF/CFD8-B/CFD831Q.Seq.d/                       1183   0.0
CFI348 (CFI348Q) /CSM/CF/CFI3-B/CFI348Q.Seq.d/                       1176   0.0
VSF366 (VSF366Q) /CSM/VS/VSF3-C/VSF366Q.Seq.d/                         40   0.038
SLB170 (SLB170Q) /CSM/SL/SLB1-C/SLB170Q.Seq.d/                         40   0.038
SSB249 (SSB249Q) /CSM/SS/SSB2-C/SSB249Q.Seq.d/                         38   0.15
AHF604 (AHF604Q) /CSM/AH/AHF6-A/AHF604Q.Seq.d/                         38   0.15
AHF340 (AHF340Q) /CSM/AH/AHF3-B/AHF340Q.Seq.d/                         38   0.15
AHE752 (AHE752Q) /CSM/AH/AHE7-C/AHE752Q.Seq.d/                         38   0.15
AHO874 (AHO874Q) /CSM/AH/AHO8-D/AHO874Q.Seq.d/                         36   0.60

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   2e-11  21
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   3e-10  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   4e-10  23
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   2e-09  22
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    40   7e-09  15
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    38   8e-09  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   2e-08  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   2e-08  23
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   4e-08  22
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    36   6e-08  15

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM942759_1526(AM942759|pid:none) Proteus mirabilis strain HI4320...    55   1e-06
AF1825(AF1825) hypothetical protein alr0150 [imported] - Nostoc ...    48   2e-04
CP000117_1514(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    47   3e-04
AP008957_2495(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    47   5e-04
AL939110_67(AL939110|pid:none) Streptomyces coelicolor A3(2) com...    46   7e-04
CP000828_1043(CP000828|pid:none) Acaryochloris marina MBIC11017,...    45   0.002
AY962392_79(AY962392|pid:none) Aeromonas phage 31, complete geno...    45   0.002
BX294149_258(BX294149|pid:none) Rhodopirellula baltica SH 1 comp...    45   0.002
AP009493_5735(AP009493|pid:none) Streptomyces griseus subsp. gri...    45   0.002
EU826466_3(EU826466|pid:none) Mycobacterium phage Myrna, complet...    44   0.003

 psg: 0.75  gvh: 0.46  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFD831 is nuc

>CFD831F.Seq
ATTTAATAATATAGAATGTCAGACCAAGAGTATTATAAAGATTTTAGTAATAAAATTATT
AAAGAAAGAAAAAAGAATATTGAAAATGATGAATCAAAAGTGATTTATTTTACATTAGCA
GGTAGTCATTCATTTAATTTAAATGTTGAAAGTAGTGATAAGGATTATTTTGGTGTTTAT
TGTTCAGATATTGATGATATATTAGTTGGTGATATTAAACAACCAATTATTGATAGTCAT
GAACCAGATGATTATATTTTATTTGAAGTTGAAAGATTTTGTGAACTTTTATATAAAGGT
AATCCAAAATTGATAGAACCAATGTTTACCACAAGATTTTGTTACAAATCACCAATTTGG
GAACAACTTTTCTTAAATAGAAAAGAATTAATTAGTCAATCTGCAATTCAACATTATTTA
AGTTATAGTAAATCTCAAATGGGTGATGCATCAAAATTAATCTTTAAAAACGGCTCACCA
ATTTCAATTGAATGTGGTGGGTCAGAACAAGAGGAAGAAGATAAAAAGAAATTACTATTA
TCAATGATTAATAGTAATCATAGTTATTGTAAAAAGTTATATCATACCTATAGATTG---
-------