CFD826
Library CF
(Link to library)
Clone ID CFD826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14187-1
Original site URL
Representative seq. ID CFD826P
(Link to Original site)
Representative DNA sequence
>CFD826 (CFD826Q) /CSM/CF/CFD8-B/CFD826Q.Seq.d/
ATTATAATAATAGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGAT
GGCATCAAATAAACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAA
AGAAGATGCAGAGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTT
CGGAGTAGATGAAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGA
TAAATTCATTGGTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAA
ACTTTCAAAAGAAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGA
ATCATTTAAACAATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTC
ATGTGAAACAGTTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGT
TAAAGCTATTGCTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACA
TCAAGAXXXXXXXXXXTGCATATACATCATTAGGTNNGTTCTCAGNAGCAATGGAAGCAT
ATAATANAGCAATTGAATTAGAACCAAATAATGAAACTTTTAAAGCATCNCTTACCANTG
CTGAAAGACTTGCTGCTGCTGCAAACAATCAAGCACCAGCTATGCCNAATATTCCAGGTA
TGCCAGATTTAGGTGGTTTAGATTTTGGTTCACTCTTAAGTAANCCAGCAATTAGAGGTT
TAGCAAACAACTTAATGTCTGATCCAAAAATGAAAGAAATGATGGATAATGGTGATATGG
CTAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
l***VTSNNIKNNNKLFEKMASNKQKLAVSILNFLKVSMKEDAENAESLQVAVECIRDVF
GVDENDSTLQVSAPLSEIFDKFIGENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLE
SFKQFITILEQKGAFANEDSCETVIKATKQKFMESKAGEVKAIAEKLKNEGNAKLNEGKH
Q---

---AYTSLGXFSXAMEAYNXAIELEPNNETFKASLTXAERLAAAANNQAPAMPNIPGMPD
LGGLDFGSLLSXPAIRGLANNLMSDPKMKEMMDNGDMAS


Translated Amino Acid sequence (All Frames)
Frame A:
iiiigyi**h*k***ii*edgik*tkiss*yfklfksinerrcrec*kftscsrmy*rcf
rsr*k*fnftsfstii*nfr*ihw*k*yqyhhhhhyhhyktfkrriiksnl**npirts*
ii*tiyhns*tkrcfck*rfm*nsy*snktkvhgk*sr*s*syc*kike*r*c*ie*r*t
sr---

---ciyiirxvlxsngsi*xsn*irtk**nf*sixyxc*ktcccckqsstsyaxysryar
frwfrfwftlk*xsn*rfskqlnv*sknerndg*w*yg*

Frame B:
l***VTSNNIKNNNKLFEKMASNKQKLAVSILNFLKVSMKEDAENAESLQVAVECIRDVF
GVDENDSTLQVSAPLSEIFDKFIGENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLE
SFKQFITILEQKGAFANEDSCETVIKATKQKFMESKAGEVKAIAEKLKNEGNAKLNEGKH
Q---

---AYTSLGXFSXAMEAYNXAIELEPNNETFKASLTXAERLAAAANNQAPAMPNIPGMPD
LGGLDFGSLLSXPAIRGLANNLMSDPKMKEMMDNGDMAS

Frame C:
ynnrlhlitlkiiinylrrwhqinkn*qlvf*tf*kyq*kkmqrmlkvyklqsnvlemfs
e*mkmiqlykfqhhylkfsinslvkiipippppplpplqnfqkkny*iklivkshtnfln
hlnnlsqflnkkvllqmkihvkqllkqqnksswkvkqvklklllkn*rmkvmln*mkvni
k---

---hihh*vxsqxqwkhiixqln*nqimkllkhxlpxlkdllllqtikhqlcxifqvcqi
*vv*ilvhs*vxqqlev*qtt*cliqk*kk*wimviwl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD826 (CFD826Q) /CSM/CF/CFD8-B/CFD826Q.Seq.d/ 985 0.0
VFK138 (VFK138Q) /CSM/VF/VFK1-B/VFK138Q.Seq.d/ 531 e-150
VFJ283 (VFJ283Q) /CSM/VF/VFJ2-D/VFJ283Q.Seq.d/ 531 e-150
VFI635 (VFI635Q) /CSM/VF/VFI6-B/VFI635Q.Seq.d/ 531 e-150
VFE792 (VFE792Q) /CSM/VF/VFE7-D/VFE792Q.Seq.d/ 531 e-150
VFC352 (VFC352Q) /CSM/VF/VFC3-C/VFC352Q.Seq.d/ 531 e-150
CHF231 (CHF231Q) /CSM/CH/CHF2-B/CHF231Q.Seq.d/ 531 e-150
CHD756 (CHD756Q) /CSM/CH/CHD7-C/CHD756Q.Seq.d/ 531 e-150
CHD656 (CHD656Q) /CSM/CH/CHD6-C/CHD656Q.Seq.d/ 531 e-150
CHD106 (CHD106Q) /CSM/CH/CHD1-A/CHD106Q.Seq.d/ 531 e-150

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 2e-08 18
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 8e-06 15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 44 1e-05 13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 1e-05 16
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 42 2e-05 9
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 3e-05 10
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 34 3e-05 10
AF310884|AF310884.1 Dictyostelium discoideum Rac1B (rac1B) gene, complete cds; racK pseudogene, complete sequence; and unknown genes. 36 3e-05 4
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 38 4e-05 12
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 5e-05 17
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VG4) RecName: Full=Small glutamine-rich tetratricopeptide re... 282 8e-75
BC074276_1(BC074276|pid:none) Xenopus laevis MGC84046 protein, m... 50 1e-04
T16689(T16689) hypothetical protein R05F9.10 - Caenorhabditis el... 47 8e-04
(O43765) RecName: Full=Small glutamine-rich tetratricopeptide re... 45 0.003
AY894091_1(AY894091|pid:none) Synthetic construct Homo sapiens c... 45 0.003
AB169229_1(AB169229|pid:none) Macaca fascicularis testis cDNA, c... 45 0.003
(Q32LM2) RecName: Full=Small glutamine-rich tetratricopeptide re... 45 0.003
(Q8VD33) RecName: Full=Small glutamine-rich tetratricopeptide re... 45 0.004
AJ721018_1(AJ721018|pid:none) Gallus gallus mRNA for hypothetica... 44 0.005
CR382139_190(CR382139|pid:none) Debaryomyces hansenii strain CBS... 44 0.005
protein update 2009. 5.13
PSORT

psg: 0.65 gvh: 0.46 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: mitochondrial
24.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for CFD826 is cyt

5' end seq. ID CFD826F
5' end seq.
>CFD826F.Seq
ATTATAATAATAGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGAT
GGCATCAAATAAACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAA
AGAAGATGCAGAGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTT
CGGAGTAGATGAAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGA
TAAATTCATTGGTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAA
ACTTTCAAAAGAAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGA
ATCATTTAAACAATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTC
ATGTGAAACAGTTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGT
TAAAGCTATTGCTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACA
TCAAGA----------
Length of 5' end seq. 546
3' end seq. ID CFD826Z
3' end seq.
>CFD826Z.Seq
----------TGCATATACATCATTAGGTNNGTTCTCAGNAGCAATGGAAGCATATAATA
NAGCAATTGAATTAGAACCAAATAATGAAACTTTTAAAGCATCNCTTACCANTGCTGAAA
GACTTGCTGCTGCTGCAAACAATCAAGCACCAGCTATGCCNAATATTCCAGGTATGCCAG
ATTTAGGTGGTTTAGATTTTGGTTCACTCTTAAGTAANCCAGCAATTAGAGGTTTAGCAA
ACAACTTAATGTCTGATCCAAAAATGAAAGAAATGATGGATAATGGTGATATGGCTAGT
Length of 3' end seq. 289
Connected seq. ID CFD826P
Connected seq.
>CFD826P.Seq
ATTATAATAATAGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGAT
GGCATCAAATAAACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAA
AGAAGATGCAGAGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTT
CGGAGTAGATGAAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGA
TAAATTCATTGGTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAA
ACTTTCAAAAGAAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGA
ATCATTTAAACAATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTC
ATGTGAAACAGTTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGT
TAAAGCTATTGCTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACA
TCAAGA----------TGCATATACATCATTAGGTNNGTTCTCAGNAGCAATGGAAGCAT
ATAATANAGCAATTGAATTAGAACCAAATAATGAAACTTTTAAAGCATCNCTTACCANTG
CTGAAAGACTTGCTGCTGCTGCAAACAATCAAGCACCAGCTATGCCNAATATTCCAGGTA
TGCCAGATTTAGGTGGTTTAGATTTTGGTTCACTCTTAAGTAANCCAGCAATTAGAGGTT
TAGCAAACAACTTAATGTCTGATCCAAAAATGAAAGAAATGATGGATAATGGTGATATGG
CTAGT
Length of connected seq. 835
Full length Seq ID -
Full length Seq. -
Length of full length seq. -