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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD818
Library CF
(Link to library)
Clone ID CFD818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14985-1
Original site URL
Representative seq. ID CFD818P
(Link to Original site)
Representative DNA sequence 
>CFD818 (CFD818Q) /CSM/CF/CFD8-A/CFD818Q.Seq.d/
AGCGTTGTATTTGTAGAAAAAAAAAGATAGATTAATAGATTGATATATGGAAAATTTAAA
TTAAAGATGTCAGTTTTACCAAATGATACAATTAAAATTATAGCGGAATCAGCAGGTATT
TCAAATTTACCAGATGAAATAGCACAACAATTAGCATCGGATGTAGAATATAGAATTAGA
GAGATTGCACAAGAAGCGATTAAATTTATGAAACATTCAAAAAGAGATCACCTTTCAACC
GATGATATAAACAATGCATTAGGTTTAAGAAATATTGAGCAACTCTATGGCTATAGTTGT
AGTGCCAATGATCACAGTTTATTAAAATTTCAAAAAACCACAACAACAACACAGGCCATC
TATTTTTTAAATGATAAAGAGATGACATTTCAAGAGATTGCATCACAACCGTTACCAAAG
GTACCACGTGATCCATCACTTTCAGCACATTGGTTAGCATTGGAAGGTGTGCAACCATTG
ATTCCTCAAAATCCATCACCCTATGAAATTGAAGAACATCATAAAAATTTACATAAAAAA
TTCAAGAGTGAGAAAGCACTTCAATTGGAACAACAAGCACAAGCATTATTAACACAACAA
AXXXXXXXXXXACATTACATGATNCAACCAAACCTTTAACAACTCATTATGGTGCAATCG
TTGGTTTATCAGGTTTAGGTAGAAATGTTATACAATTTTTATTATTACCTTATGTACCAA
AATATTATAAACTCTTGGAACCAGAATTAAATAATAATTTATCAAATCCAATAAAATCAA
TGGAAGCCAATAGAGTTTTAAATTCAATCATAGATGCAACTGGTAAATTCTTAATTTGGG
TATCAGAAGGTGAAAATATTCTCTCAGTTTTAGATTTAAAAGATGATACAACTTCAAAAA
AGCAACCAATCTCTTTACCAATCATAACAGAGTTTTCACGTGAAAATATTTTAAAAACTT
TAAAAATTCAATATCAATCACTTTTTGATTTATTTGGTGAAAAATTATTAGCATATATAA
AACCAGATAATGATTNCTGAAACAATGNTTTTAATNCCTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
svvfvekkr*INRLIYGKFKLKMSVLPNDTIKIIAESAGISNLPDEIAQQLASDVEYRIR
EIAQEAIKFMKHSKRDHLSTDDINNALGLRNIEQLYGYSCSANDHSLLKFQKTTTTTQAI
YFLNDKEMTFQEIASQPLPKVPRDPSLSAHWLALEGVQPLIPQNPSPYEIEEHHKNLHKK
FKSEKALQLEQQAQALLTQQ---

---TLHDXTKPLTTHYGAIVGLSGLGRNVIQFLLLPYVPKYYKLLEPELNNNLSNPIKSM
EANRVLNSIIDATGKFLIWVSEGENILSVLDLKDDTTSKKQPISLPIITEFSRENILKTL
KIQYQSLFDLFGEKLLAYIKPDNDX*nnxfnx*
Translated Amino Acid sequence (All Frames) 
Frame A:
svvfvekkr*INRLIYGKFKLKMSVLPNDTIKIIAESAGISNLPDEIAQQLASDVEYRIR
EIAQEAIKFMKHSKRDHLSTDDINNALGLRNIEQLYGYSCSANDHSLLKFQKTTTTTQAI
YFLNDKEMTFQEIASQPLPKVPRDPSLSAHWLALEGVQPLIPQNPSPYEIEEHHKNLHKK
FKSEKALQLEQQAQALLTQQ---

---TLHDXTKPLTTHYGAIVGLSGLGRNVIQFLLLPYVPKYYKLLEPELNNNLSNPIKSM
EANRVLNSIIDATGKFLIWVSEGENILSVLDLKDDTTSKKQPISLPIITEFSRENILKTL
KIQYQSLFDLFGEKLLAYIKPDNDX*nnxfnx*

Frame B:
alyl*kkkdrlid*ymenln*rcqfyqmiqlkl*rnqqvfqiyqmk*hnn*hrm*niele
rlhkkrlnl*niqkeitfqpmi*tmh*v*eilsnsmaivvvpmitvy*nfkkpqqqhrps
if*mikr*hfkrlhhnryqryhvihhfqhig*hwkvcnh*flkihhpmklkniikiyikn
srvrkhfnwnnkhkhy*hnk---

---hymxqpnl*qlimvqslvyqv*vemlynfyyylmyqniinswnqn*iiiyqiq*nqw
kpief*iqs*mqlvns*fgyqkvkifsqf*i*kmiqlqksnqslyqs*qsfhvkif*kl*
kfninhfliylvkny*hi*nqimixetmxlxpk

Frame C:
rcicrkkkid**idiwki*ikdvsftk*yn*nysgisryfkftr*nsttisigcri*n*r
dctrsd*iyetfkkrspfnr*ykqcirfkky*atlwl*l*cq*sqfikisknhnnntghl
ffk**rddisrdcittvtkgtt*sitfstlvsigrcatidssksitl*n*rts*kft*ki
qe*estsigttstsiintt---

---it*xnqtfnnslwcnrwfirfr*kcytifiitlctkil*tlgtrik**fiksnking
sq*sfkfnhrcnw*ilnlgirr*kyslsfrfkr*ynfkkatnlftnhnrvft*kyfknfk
nsisitf*fiw*kiisiyktr**xlkqxf*xlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD818 (CFD818Q) /CSM/CF/CFD8-A/CFD818Q.Seq.d/                       1974   0.0
AFH167 (AFH167Q) /CSM/AF/AFH1-C/AFH167Q.Seq.d/                       1142   0.0
VFB837 (VFB837Q) /CSM/VF/VFB8-B/VFB837Q.Seq.d/                       1134   0.0
AFF650 (AFF650Q) /CSM/AF/AFF6-C/AFF650Q.Seq.d/                       1128   0.0
SFB667 (SFB667Q) /CSM/SF/SFB6-C/SFB667Q.Seq.d/                       1102   0.0
AFL754 (AFL754Q) /CSM/AF/AFL7-C/AFL754Q.Seq.d/                       1094   0.0
AFG548 (AFG548Q) /CSM/AF/AFG5-B/AFG548Q.Seq.d/                       1065   0.0
AFJ105 (AFJ105Q) /CSM/AF/AFJ1-A/AFJ105Q.Seq.d/                       1043   0.0
AFH169 (AFH169Q) /CSM/AF/AFH1-C/AFH169Q.Seq.d/                       1029   0.0
CHB674 (CHB674Q) /CSM/CH/CHB6-D/CHB674Q.Seq.d/                        846   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   2e-13  26
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   2e-13  26
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   4e-13  19
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   3e-11  23
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   3e-10  24
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   1e-09  23
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   6e-09  27
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   6e-09  27
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    42   1e-08  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   5e-08  18
dna update 2004. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382129_194(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   160   9e-38
CR380952_301(CR380952|pid:none) Candida glabrata strain CBS138 c...   145   2e-33
CP000496_835(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   143   9e-33
AK300005_1(AK300005|pid:none) Homo sapiens cDNA FLJ55523 complet...   143   9e-33
BC100108_1(BC100108|pid:none) Rattus norvegicus TAF6 RNA polymer...   143   1e-32
(Q62311) RecName: Full=Transcription initiation factor TFIID sub...   143   1e-32
CR627390_1(CR627390|pid:none) Homo sapiens mRNA; cDNA DKFZp781E2...   143   1e-32
BT021630_1(BT021630|pid:none) Bos taurus TAF6 RNA polymerase II,...   143   1e-32
JC4245(JC4245)transcription factor IID chain - mouse                  143   1e-32
AJ293586_1(AJ293586|pid:none) Pleurodeles waltl mRNA for TAFII70...   142   2e-32
protein update 2009. 5.13
PSORT 

 psg: 0.74  gvh: 0.29  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CFD818 is cyt
5' end seq. ID CFD818F
5' end seq. 
>CFD818F.Seq
AGCGTTGTATTTGTAGAAAAAAAAAGATAGATTAATAGATTGATATATGGAAAATTTAAA
TTAAAGATGTCAGTTTTACCAAATGATACAATTAAAATTATAGCGGAATCAGCAGGTATT
TCAAATTTACCAGATGAAATAGCACAACAATTAGCATCGGATGTAGAATATAGAATTAGA
GAGATTGCACAAGAAGCGATTAAATTTATGAAACATTCAAAAAGAGATCACCTTTCAACC
GATGATATAAACAATGCATTAGGTTTAAGAAATATTGAGCAACTCTATGGCTATAGTTGT
AGTGCCAATGATCACAGTTTATTAAAATTTCAAAAAACCACAACAACAACACAGGCCATC
TATTTTTTAAATGATAAAGAGATGACATTTCAAGAGATTGCATCACAACCGTTACCAAAG
GTACCACGTGATCCATCACTTTCAGCACATTGGTTAGCATTGGAAGGTGTGCAACCATTG
ATTCCTCAAAATCCATCACCCTATGAAATTGAAGAACATCATAAAAATTTACATAAAAAA
TTCAAGAGTGAGAAAGCACTTCAATTGGAACAACAAGCACAAGCATTATTAACACAACAA
A----------
Length of 5' end seq. 601
3' end seq. ID CFD818Z
3' end seq. 
>CFD818Z.Seq
----------ACATTACATGATNCAACCAAACCTTTAACAACTCATTATGGTGCAATCGT
TGGTTTATCAGGTTTAGGTAGAAATGTTATACAATTTTTATTATTACCTTATGTACCAAA
ATATTATAAACTCTTGGAACCAGAATTAAATAATAATTTATCAAATCCAATAAAATCAAT
GGAAGCCAATAGAGTTTTAAATTCAATCATAGATGCAACTGGTAAATTCTTAATTTGGGT
ATCAGAAGGTGAAAATATTCTCTCAGTTTTAGATTTAAAAGATGATACAACTTCAAAAAA
GCAACCAATCTCTTTACCAATCATAACAGAGTTTTCACGTGAAAATATTTTAAAAACTTT
AAAAATTCAATATCAATCACTTTTTGATTTATTTGGTGAAAAATTATTAGCATATATAAA
ACCAGATAATGATTNCTGAAACAATGNTTTTAATNCCTAAAA
Length of 3' end seq. 452
Connected seq. ID CFD818P
Connected seq. 
>CFD818P.Seq
AGCGTTGTATTTGTAGAAAAAAAAAGATAGATTAATAGATTGATATATGGAAAATTTAAA
TTAAAGATGTCAGTTTTACCAAATGATACAATTAAAATTATAGCGGAATCAGCAGGTATT
TCAAATTTACCAGATGAAATAGCACAACAATTAGCATCGGATGTAGAATATAGAATTAGA
GAGATTGCACAAGAAGCGATTAAATTTATGAAACATTCAAAAAGAGATCACCTTTCAACC
GATGATATAAACAATGCATTAGGTTTAAGAAATATTGAGCAACTCTATGGCTATAGTTGT
AGTGCCAATGATCACAGTTTATTAAAATTTCAAAAAACCACAACAACAACACAGGCCATC
TATTTTTTAAATGATAAAGAGATGACATTTCAAGAGATTGCATCACAACCGTTACCAAAG
GTACCACGTGATCCATCACTTTCAGCACATTGGTTAGCATTGGAAGGTGTGCAACCATTG
ATTCCTCAAAATCCATCACCCTATGAAATTGAAGAACATCATAAAAATTTACATAAAAAA
TTCAAGAGTGAGAAAGCACTTCAATTGGAACAACAAGCACAAGCATTATTAACACAACAA
A----------ACATTACATGATNCAACCAAACCTTTAACAACTCATTATGGTGCAATCG
TTGGTTTATCAGGTTTAGGTAGAAATGTTATACAATTTTTATTATTACCTTATGTACCAA
AATATTATAAACTCTTGGAACCAGAATTAAATAATAATTTATCAAATCCAATAAAATCAA
TGGAAGCCAATAGAGTTTTAAATTCAATCATAGATGCAACTGGTAAATTCTTAATTTGGG
TATCAGAAGGTGAAAATATTCTCTCAGTTTTAGATTTAAAAGATGATACAACTTCAAAAA
AGCAACCAATCTCTTTACCAATCATAACAGAGTTTTCACGTGAAAATATTTTAAAAACTT
TAAAAATTCAATATCAATCACTTTTTGATTTATTTGGTGAAAAATTATTAGCATATATAA
AACCAGATAATGATTNCTGAAACAATGNTTTTAATNCCTAAAA
Length of connected seq. 1053
Full length Seq ID -
Full length Seq. -
Length of full length seq. -