>CFD810 (CFD810Q) /CSM/CF/CFD8-A/CFD810Q.Seq.d/
XXXXXXXXXXTATTATTCATTAAATGGTAAAATTTCNAGAATTAATGTTAANACAGGTTT
AAATGNAATTTTNTTTGATTCAAATTTAAATAAAAGTCNTTGNATTTGTGCTCAAGGGTT
TACGGGTGATTACATGTGATCNNTGTGNTCAATCAAATNATTTAATATNCTTGGGTAAAT
GGTATTCCAAGATGTATNCCNTTAACAAATG

---YSLNGKISRINVXTGLNXIXFDSNLNKSXXICAQGFTGDYM*sxxsikxfnxlg*mv
fqdvxx*qm

Frame A:
---iih*mvkfxelmlxqv*mxfxliqi*ikvxxfvlkglrvitcdxcxqsnxlixlgkw
yskmyxxnk


Frame B:
---lfikw*nfxn*c*xrfkxnfx*fkfk*kslxlcsrvyg*lhvixvxnqxi*yxwvng
iprcxpltn


Frame C:
---YSLNGKISRINVXTGLNXIXFDSNLNKSXXICAQGFTGDYM*sxxsikxfnxlg*mv
fqdvxx*qm

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD810 (CFD810Q) /CSM/CF/CFD8-A/CFD810Q.Seq.d/                        321   2e-87
SFI683 (SFI683Q) /CSM/SF/SFI6-D/SFI683Q.Seq.d/                        287   3e-77
CFH443 (CFH443Q) /CSM/CF/CFH4-B/CFH443Q.Seq.d/                        287   3e-77
CFG831 (CFG831Q) /CSM/CF/CFG8-B/CFG831Q.Seq.d/                        274   5e-73
CFH365 (CFH365Q) /CSM/CF/CFH3-C/CFH365Q.Seq.d/                        270   8e-72
SSE646 (SSE646Q) /CSM/SS/SSE6-B/SSE646Q.Seq.d/                         48   5e-05
SSB120 (SSB120Q) /CSM/SS/SSB1-A/SSB120Q.Seq.d/                         48   5e-05
SSD266 (SSD266Q) /CSM/SS/SSD2-C/SSD266Q.Seq.d/                         44   8e-04
SSI317 (SSI317Q) /CSM/SS/SSI3-A/SSI317Q.Seq.d/                         36   0.20
VHI702 (VHI702Q) /CSM/VH/VHI7-A/VHI702Q.Seq.d/                         34   0.78

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX005275|BX005275.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-118J18.    44   0.73   1
BX004864|BX004864.7 Zebrafish DNA sequence from clone DKEY-117N7.    44   0.73   1
AQ861582|AQ861582.1 nbeb0017I19r CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0017I19r, genomic survey sequence.    36   1.0    2
AQ861914|AQ861914.1 nbeb0017L16r CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0017L16r, genomic survey sequence.    36   1.2    2
AQ864791|AQ864791.1 nbeb0024A08f CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0024A08f, genomic survey sequence.    36   1.6    2
AQ862272|AQ862272.1 nbeb0018H05r CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0018H05r, genomic survey sequence.    36   1.8    2
AE003494|AE003494.3 Drosophila melanogaster chromosome X section 46 of 74 of the complete sequence.    34   2.7    5
AJ005262|AJ005262.1 Dictyostelium discoideum gene encoding a novel glycoprotein.    42   2.9    1
AC095499|AC095499.7 Rattus norvegicus clone CH230-7P10, WORKING DRAFT SEQUENCE, 1 ordered piece.    42   2.9    1
AC094439|AC094439.4 Rattus norvegicus clone CH230-4E23, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    42   2.9    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 187,378,534

 psg: 0.83  gvh: 0.39  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CFD810 is cyt

>CFD810Z.Seq
----------TATTATTCATTAAATGGTAAAATTTCNAGAATTAATGTTAANACAGGTTT
AAATGNAATTTTNTTTGATTCAAATTTAAATAAAAGTCNTTGNATTTGTGCTCAAGGGTT
TACGGGTGATTACATGTGATCNNTGTGNTCAATCAAATNATTTAATATNCTTGGGTAAAT
GGTATTCCAAGATGTATNCCNTTAACAAATG