CFD807
Library CF
(Link to library)
Clone ID CFD807
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10800-1
Original site URL
Representative seq. ID CFD807F
(Link to Original site)
Representative DNA sequence
>CFD807 (CFD807Q) /CSM/CF/CFD8-A/CFD807Q.Seq.d/
ATTAAATATAAATATATTCATGAAGGCCATAGTTTTAATTATTTTTATTTTATTAATCAA
TAATCAAATTGTAAAAACTTGGGATCAAAATGATGTTAAACAATTTTTTAACAATTATCC
ATTTGGTATTAAATCTAGTAGTGGATTTTATTATGATACTCAAGTTTCAACACTGAATGG
AACAATTTATGGATTTACAAAGAATGGATTTGTTGATTTTCCAGAGAATCCAGGATTTGA
AGAGTCAGGATTTTATTTAGACCAATCAGTTGATATGGTTGAAGATAGATTGGGAGCAGA
TGGTAGACCAGTTTATAAAAATGGTAATGAACCATTCATTGTTACAAATAAGGAAACTGG
TAAACAATTTACATTGGCACATAATTCATCAACATTTTATGATTGGTTTCATTCAAGTCC
ATGTGTGAATTATCCATTAAATGGTAGTATATGGATTACAAAGAATGCTTTACAAGGTGT
TGCATTTAAACCAACAAACGACGTTTATCCATACGATATCGGAACTCAAGATAATCAATT
ACCCTATTTCCATCATTCTACTTTCTCTTTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
LNINIFMKAIVLIIFILLINNQIVKTWDQNDVKQFFNNYPFGIKSSSGFYYDTQVSTLNG
TIYGFTKNGFVDFPENPGFEESGFYLDQSVDMVEDRLGADGRPVYKNGNEPFIVTNKETG
KQFTLAHNSSTFYDWFHSSPCVNYPLNGSIWITKNALQGVAFKPTNDVYPYDIGTQDNQL
PYFHHSTFS---


Translated Amino Acid sequence (All Frames)
Frame A:
ikykyiheghsfnyfyfinq*sncknlgsk*c*tif*qlsiwy*i**will*yssfntew
nnlwiykewic*fsresri*rvrilfrpis*yg*r*igsrw*tsl*kw**tihcyk*gnw
*tiyigt*finil*lvsfksmcelsikw*ymdykecftrcci*tnkrrlsiryrnsr*si
tlfpsfyfl---


Frame B:
LNINIFMKAIVLIIFILLINNQIVKTWDQNDVKQFFNNYPFGIKSSSGFYYDTQVSTLNG
TIYGFTKNGFVDFPENPGFEESGFYLDQSVDMVEDRLGADGRPVYKNGNEPFIVTNKETG
KQFTLAHNSSTFYDWFHSSPCVNYPLNGSIWITKNALQGVAFKPTNDVYPYDIGTQDNQL
PYFHHSTFS---


Frame C:
*i*iys*rp*f*lflfy*siikl*klgikmmlnnfltiihlvlnlvvdfimilkfqh*me
qfmdlqrmdllifqriqdlksqdfi*tnqliwlkidweqmvdqfikmvmnhsllqirklv
nnlhwhiihqhfmigfiqvhv*iih*mvvyglqrmlykvlhlnqqttfihtiselkiiny
pisiillsl---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD807 (CFD807Q) /CSM/CF/CFD8-A/CFD807Q.Seq.d/ 1130 0.0
CFC284 (CFC284Q) /CSM/CF/CFC2-D/CFC284Q.Seq.d/ 1130 0.0
CHB588 (CHB588Q) /CSM/CH/CHB5-D/CHB588Q.Seq.d/ 1124 0.0
AFD372 (AFD372Q) /CSM/AF/AFD3-C/AFD372Q.Seq.d/ 1120 0.0
CFI476 (CFI476Q) /CSM/CF/CFI4-D/CFI476Q.Seq.d/ 1112 0.0
CFH329 (CFH329Q) /CSM/CF/CFH3-B/CFH329Q.Seq.d/ 1110 0.0
CFA195 (CFA195Q) /CSM/CF/CFA1-D/CFA195Q.Seq.d/ 1104 0.0
SFF751 (SFF751Q) /CSM/SF/SFF7-C/SFF751Q.Seq.d/ 1019 0.0
CFF495 (CFF495Q) /CSM/CF/CFF4-D/CFF495Q.Seq.d/ 967 0.0
AFJ225 (AFJ225Q) /CSM/AF/AFJ2-B/AFJ225Q.Seq.d/ 965 0.0

own update 2003. 9.30
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF318287|AF318287.1 Dictyostelium discoideum putative calmodulin-binding protein CamBP64 mRNA, complete cds. 1130 0.0 1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 6e-07 15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 1e-06 14
AP003187|AP003187.2 Clostridium perfringens str. 13 DNA, complete genome, section 3/10. 36 2e-06 12
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 34 5e-06 11
AE014016|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome. 34 8e-06 15
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 1e-05 14
AL010277|AL010277.1 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from contig 4-108. 36 3e-05 5
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 34 3e-05 14
AC144457|AC144457.1 Homo sapiens chromosome 16 clone CTD-2116I12, WORKING DRAFT SEQUENCE, 39 unordered pieces. 38 4e-05 9
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 61 2e-08
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 58 2e-07
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 47 3e-04
AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 47 4e-04
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 40 0.034
CP000826_4316(CP000826|pid:none) Serratia proteamaculans 568, co... 36 0.64
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 36 0.64
AF399011_284(AF399011|pid:none) Pseudomonas phage phiKZ, complet... 36 0.64
CP001056_397(CP001056|pid:none) Clostridium botulinum B str. Ekl... 36 0.64
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 35 1.4
protein update 2008.12.25
PSORT

psg: 1.01 gvh: 0.49 alm: 0.15 top: 0.40 tms: 0.07 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for CFD807 is end

5' end seq. ID CFD807F
5' end seq.
>CFD807F.Seq
ATTAAATATAAATATATTCATGAAGGCCATAGTTTTAATTATTTTTATTTTATTAATCAA
TAATCAAATTGTAAAAACTTGGGATCAAAATGATGTTAAACAATTTTTTAACAATTATCC
ATTTGGTATTAAATCTAGTAGTGGATTTTATTATGATACTCAAGTTTCAACACTGAATGG
AACAATTTATGGATTTACAAAGAATGGATTTGTTGATTTTCCAGAGAATCCAGGATTTGA
AGAGTCAGGATTTTATTTAGACCAATCAGTTGATATGGTTGAAGATAGATTGGGAGCAGA
TGGTAGACCAGTTTATAAAAATGGTAATGAACCATTCATTGTTACAAATAAGGAAACTGG
TAAACAATTTACATTGGCACATAATTCATCAACATTTTATGATTGGTTTCATTCAAGTCC
ATGTGTGAATTATCCATTAAATGGTAGTATATGGATTACAAAGAATGCTTTACAAGGTGT
TGCATTTAAACCAACAAACGACGTTTATCCATACGATATCGGAACTCAAGATAATCAATT
ACCCTATTTCCATCATTCTACTTTCTCTTT----------
Length of 5' end seq. 570
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -