CFD758
Library CF
(Link to library)
Clone ID CFD758
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID CFD758F
(Link to Original site)
Representative DNA sequence
>CFD758 (CFD758Q) /CSM/CF/CFD7-C/CFD758Q.Seq.d/
AAATTTATTTNACAAAAAGTATAATACAAGATGGGTAAAGAAAAAACACATATTAATATC
GTCGTTATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAATCTACAAA
TGTGGTGGTATCGATAAAAGAGTTATCGAAAAATACGAAAAGGAAGCTTCTGAAATGGGT
AAACAATCATTCAAATATGCTTGGGTTATGGATAAATTAAAAGCTGAACGTGAAAGAGGT
ATTACCATCGATATTGCTTTATGGAAATTCGAAACCTCAAAATACTACTTCACCATTATT
GATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCACAAGCCGAT
TGTGCTGTCTTAGTCATTGCCTCCCCAACTGGTGAGTTCGAAGCTGGTATTGCCAAGAAC
GGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAATGATCGTT
GCTATTAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGACGAAATT
GTCAAAGAAGTTTCATCTTTCATTAAAAAGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
kfixqkv*YKMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMG
KQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQAD
CAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEI
VKEVSSFIK---


Translated Amino Acid sequence (All Frames)
Frame A:
kfixqkv*YKMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMG
KQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQAD
CAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEI
VKEVSSFIK---


Frame B:
nlfxkkyntrwvkkkhilissllvt*mlvnqpplvi*stnvvvsikelskntkrkllkwv
nnhsnmlglwin*klnvkevlpsillygnskpqnttspllmlqvteissri*llvphkpi
vls*slppqlvssklvlprtvklvntlslltl*vsnk*sllltrwmknqptthkpvttkl
skkfhlslk---


Frame C:
iyxtksiiqdg*rknty*yrrywsrrcw*inhhwsfnlqmwwyr*ksyrkirkgsf*ng*
tiiqiclgyg*iks*t*kryyhrycfmeirnlkillhhy*csrsqrfhqeydywyltsrl
cclshclpnw*vrswycqersns*trspclhfrcqtndrcy*qdg*kinqlltsplrrnc
qrsfifh*k---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD758 (CFD758Q) /CSM/CF/CFD7-C/CFD758Q.Seq.d/ 1124 0.0
VFO750 (VFO750Q) /CSM/VF/VFO7-C/VFO750Q.Seq.d/ 1116 0.0
VFO682 (VFO682Q) /CSM/VF/VFO6-D/VFO682Q.Seq.d/ 1116 0.0
VFN443 (VFN443Q) /CSM/VF/VFN4-B/VFN443Q.Seq.d/ 1116 0.0
VFM669 (VFM669Q) /CSM/VF/VFM6-C/VFM669Q.Seq.d/ 1116 0.0
VFM610 (VFM610Q) /CSM/VF/VFM6-A/VFM610Q.Seq.d/ 1116 0.0
VFM513 (VFM513Q) /CSM/VF/VFM5-A/VFM513Q.Seq.d/ 1116 0.0
VFM279 (VFM279Q) /CSM/VF/VFM2-D/VFM279Q.Seq.d/ 1116 0.0
VFL419 (VFL419Q) /CSM/VF/VFL4-A/VFL419Q.Seq.d/ 1116 0.0
VFH468 (VFH468Q) /CSM/VF/VFH4-C/VFH468Q.Seq.d/ 1116 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 1045 0.0 1
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 771 0.0 2
X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 856 0.0 1
CF433932|CF433932.1 NIT1_31_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_31_E10_A002 3', mRNA sequence. 147 1e-93 3
CF433174|CF433174.1 NIT1_25_D08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_25_D08_A002 5', mRNA sequence. 147 3e-91 3
CF433248|CF433248.1 NIT1_25_H11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_25_H11_A002 5', mRNA sequence. 147 3e-91 3
CF433089|CF433089.1 NIT1_20_G08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_20_G08_A002 5', mRNA sequence. 147 3e-91 3
CF432603|CF432603.1 NIT1_17_A01.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_17_A01_A002 5', mRNA sequence. 147 5e-90 3
AF003555|AF003555.1 Polytrichum formosum elongation factor-1 alpha (EF1-a) gene, partial cds. 200 5e-87 5
CA754741|0 125 1e-84 5
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P18624) RecName: Full=Elongation factor 1-alpha; Short... 361 7e-99
X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 355 5e-97
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 355 5e-97
BC092884_1(BC092884|pid:none) Danio rerio zgc:110335, mRNA (cDNA... 320 1e-86
(P13549) RecName: Full=Elongation factor 1-alpha, somatic form; ... 320 2e-86
(Q90835) RecName: Full=Elongation factor 1-alpha 1; Sho... 320 2e-86
AK167843_1(AK167843|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 320 2e-86
AB174733_1(AB174733|pid:none) Macaca fascicularis brain cDNA clo... 320 2e-86
(P10126) RecName: Full=Elongation factor 1-alpha 1; Sho... 320 2e-86
M22432_1(M22432|pid:none) Mus musculus protein synthesis elongat... 320 2e-86
protein update 2009. 5.13
PSORT

psg: 0.84 gvh: 0.34 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CFD758 is cyt

5' end seq. ID CFD758F
5' end seq.
>CFD758F.Seq
AAATTTATTTNACAAAAAGTATAATACAAGATGGGTAAAGAAAAAACACATATTAATATC
GTCGTTATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAATCTACAAA
TGTGGTGGTATCGATAAAAGAGTTATCGAAAAATACGAAAAGGAAGCTTCTGAAATGGGT
AAACAATCATTCAAATATGCTTGGGTTATGGATAAATTAAAAGCTGAACGTGAAAGAGGT
ATTACCATCGATATTGCTTTATGGAAATTCGAAACCTCAAAATACTACTTCACCATTATT
GATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCACAAGCCGAT
TGTGCTGTCTTAGTCATTGCCTCCCCAACTGGTGAGTTCGAAGCTGGTATTGCCAAGAAC
GGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAATGATCGTT
GCTATTAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGACGAAATT
GTCAAAGAAGTTTCATCTTTCATTAAAAAG----------
Length of 5' end seq. 570
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -