CFD757
Library CF
(Link to library)
Clone ID CFD757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFD757P
(Link to Original site)
Representative DNA sequence
>CFD757 (CFD757Q) /CSM/CF/CFD7-C/CFD757Q.Seq.d/
ATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCCATTCTTGG
CTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTG
CTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAG
GTGCTGCACCAGAAGAATATGAAACATGTATCCAAGCAATGTTAGCAGCAAAAGTAAAAT
GGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGA
GAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTG
AAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTA
GATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCT
GGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCCGTACTTG
GTTGGAATGCTGCAATCTCAATGATTTGCGXXXXXXXXXXGTCGTTGCCATTGAACATGA
TGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAA
TCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTT
CACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTAT
AGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGAAGGTGAAAA
AGAGACCGGAGGTGGTAGAGAATACTGGCTACAGACAGCTGGAAACAGTATTGCCGTGCG
TAGTATCTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
flikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRG
AAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIE
AKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCAVLG
WNAAISMIC---

---VVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKW
LGPTGSDCGIVNVNVATNGAEIGGAFEGEKETGGGREYWLQTAGNSIAVRSI


Translated Amino Acid sequence (All Frames)
Frame A:
if**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllqlle
vlhqknmkhvskqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkftl
klkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishvpyl
vgmlqsq*fa---

---VVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKW
LGPTGSDCGIVNVNVATNGAEIGGAFEGEKETGGGREYWLQTAGNSIAVRSI

Frame B:
fsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycnc*r
cctrri*nmypsnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*nlh*
s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmcrtw
leccnlndl---

---slplnmmlqs*rlnslfqfst**nskiltmllpgimkshkvshlpssqtikrissng
ldlpdltvv*lt*m*lqtvlklvvplkvkkrpevventgyrqletvlpcvvs

Frame C:
flikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRG
AAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIE
AKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCAVLG
WNAAISMIC---

---rch*t*csnrkd*tlcsnslhneiqks*rcfcle**sptrslifplhkqskeylqma
wtyri*lwys*rkcsykrc*nwwcl*r*krdrrw*rilatdswkqycra*yl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD757 (CFD757Q) /CSM/CF/CFD7-C/CFD757Q.Seq.d/ 1742 0.0
VFN595 (VFN595Q) /CSM/VF/VFN5-D/VFN595Q.Seq.d/ 1122 0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/ 1122 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1122 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1122 0.0
VFJ233 (VFJ233Q) /CSM/VF/VFJ2-B/VFJ233Q.Seq.d/ 1122 0.0
VFJ183 (VFJ183Q) /CSM/VF/VFJ1-D/VFJ183Q.Seq.d/ 1122 0.0
VFI491 (VFI491Q) /CSM/VF/VFI4-D/VFI491Q.Seq.d/ 1122 0.0
VFG476 (VFG476Q) /CSM/VF/VFG4-D/VFG476Q.Seq.d/ 1122 0.0
VFF640 (VFF640Q) /CSM/VF/VFF6-B/VFF640Q.Seq.d/ 1122 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 761 0.0 7
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 3e-16 2
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 6e-12 2
AF333116|AF333116.1 Sterkiella histriomuscorum turgor-like protein gene, partial cds. 34 3e-08 5
I16834|I16834.1 Sequence 3 from patent US 5480795. 66 9e-07 1
E16764|E16764.1 cDNA encoding curculin. 66 9e-07 1
E07845|E07845.1 DNA sequence encoding curculin B. 66 9e-07 1
X64110|X64110.1 C.latifolia mRNA CUR09 for curculin. 66 9e-07 1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 4e-06 2
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence. 44 5e-06 4
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 369 e-100
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 228 2e-58
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 226 8e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 223 9e-57
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 220 6e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 219 1e-55
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 217 5e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 216 8e-55
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 215 1e-54
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 215 1e-54
protein update 2009. 5.13
PSORT

psg: 0.78 gvh: 0.31 alm: 0.27 top: 0.47 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: nuclear
24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CFD757 is nuc

5' end seq. ID CFD757F
5' end seq.
>CFD757F.Seq
ATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCCATTCTTGG
CTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTG
CTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAG
GTGCTGCACCAGAAGAATATGAAACATGTATCCAAGCAATGTTAGCAGCAAAAGTAAAAT
GGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGA
GAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTG
AAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTA
GATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCT
GGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCCGTACTTG
GTTGGAATGCTGCAATCTCAATGATTTGCG----------
Length of 5' end seq. 570
3' end seq. ID CFD757Z
3' end seq.
>CFD757Z.Seq
----------GTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGT
TCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGA
AGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATG
GCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGC
TGAAATTGGTGGTGCCTTTGAAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATACTGGCT
ACAGACAGCTGGAAACAGTATTGCCGTGCGTAGTATCTA
Length of 3' end seq. 329
Connected seq. ID CFD757P
Connected seq.
>CFD757P.Seq
ATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCCATTCTTGG
CTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTG
CTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAG
GTGCTGCACCAGAAGAATATGAAACATGTATCCAAGCAATGTTAGCAGCAAAAGTAAAAT
GGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGA
GAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTG
AAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTA
GATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCT
GGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCCGTACTTG
GTTGGAATGCTGCAATCTCAATGATTTGCG----------GTCGTTGCCATTGAACATGA
TGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAA
TCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTT
CACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTAT
AGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGAAGGTGAAAA
AGAGACCGGAGGTGGTAGAGAATACTGGCTACAGACAGCTGGAAACAGTATTGCCGTGCG
TAGTATCTA
Length of connected seq. 899
Full length Seq ID -
Full length Seq. -
Length of full length seq. -