NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD741
Library CF
(Link to library)
Clone ID CFD741
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11551-1
Original site URL
Representative seq. ID CFD741P
(Link to Original site)
Representative DNA sequence 
>CFD741 (CFD741Q) /CSM/CF/CFD7-B/CFD741Q.Seq.d/
ATTTTCGAAAACTTTAAAACACACTTTCATATAATTTTTTTTCTTTTATATTAAAATTTG
TTTAAATATAAAATGTTAAGATCATTAAAAGCTTTAAAACTTAACAGTTTAAATGCCCAA
AAAGGTATTCGTCAATTCTGTTCAGATTCTAAAATCTCTGGTCAAGTTATTGGTATTGAT
TTAGGTACAACCAATTCTTGTGTTGCTGTTATGCAAGGTGCTGAAGCCCGTGTTTTAGAA
AATGCTGAAGGTGGTCGTACCACTCCATCAGTTGTTGCCTTCACTGAAGACAACCAAAAA
ATCGTTGGTTTACCAGCTAAAAGACAAATGGTTACAAATGCTGAAAATACATTATTTGCT
ACTAAACGTTTAATTGGTCGTAGATTTGATGATCCAATGACTAAAAAAGATATGACAATG
GTACCATATAAGATTGTTAAAGGTCCAAATGGTGATGCATGGTTTGAAGTTAAAGGTAAA
ATGATTTCACCATCAGAAGCAGGTGCTATGGTTTTACAAAAGATGAAAGAAACCGCCGAA
ACCAATTTAGGTGGCCCAGTTACAGATGCTGTTATTACCGTTCCAGCATACTTTGATGAT
AGTCAACGTCAAGCCACTCGTGATGCAGGTACAATTGCAGGTTTAAXXXXXXXXXXGTAA
AGCTCAACAAGTTAGAATTCAAACCAGTGGTGGTTTAAGCAAAGATGATATCGCTCGTAT
CCTTAAAGAATCTGAAGCCAACGCTGAAGTTGATCGTAAACGTAAAGAATTAGTTGAAGC
CAGAAACAATGGTGAATCCCGTTGTATACCAAGTTGAAAAAGATTTAGTTGAATTCAAAG
ATTACCTCTCTCAACCACAAACTGAAGAAATTAAAAAAGCAGTCCAAGCCGTTCGTGATG
TCCCTTGCCAAAGAAGATGGTTCAGCCATTGAAGCTGAAATTAAAAAATTACACGATTTA
ACTCGTTNCNNCTTTGAAACTGCCNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifenfkthfhiifflly*NLFKYKMLRSLKALKLNSLNAQKGIRQFCSDSKISGQVIGID
LGTTNSCVAVMQGAEARVLENAEGGRTTPSVVAFTEDNQKIVGLPAKRQMVTNAENTLFA
TKRLIGRRFDDPMTKKDMTMVPYKIVKGPNGDAWFEVKGKMISPSEAGAMVLQKMKETAE
TNLGGPVTDAVITVPAYFDDSQRQATRDAGTIAGL---

---KAQQVRIQTSGGLSKDDIARILKESEANAEVDRKRKELVEARNNGESRCIPS*krfs
*iqrlplsttn*rn*ksspsrs*cplpkkmvqplklklknyti*lvxxlklp
Translated Amino Acid sequence (All Frames) 
Frame A:
ifenfkthfhiifflly*NLFKYKMLRSLKALKLNSLNAQKGIRQFCSDSKISGQVIGID
LGTTNSCVAVMQGAEARVLENAEGGRTTPSVVAFTEDNQKIVGLPAKRQMVTNAENTLFA
TKRLIGRRFDDPMTKKDMTMVPYKIVKGPNGDAWFEVKGKMISPSEAGAMVLQKMKETAE
TNLGGPVTDAVITVPAYFDDSQRQATRDAGTIAGL---

---vklnklefkpvvv*akmislvslknlkptlklivnvkn*lkpetmvnpvvyqvekdl
vefkdylsqpqteeikkavqavrdvpcqrrwfsh*s*n*kitrfnsxxl*ncx

Frame B:
fsktlkhtfi*ffffyikiclnikc*dh*kl*nltv*mpkkvfvnsvqilkslvkllvli
*vqpilvlllckvlkpvf*kmlkvvvplhqllpslkttkkslvyqlkdkwlqmlkihyll
lnv*lvvdlmiq*lkki*qwyhirllkvqmvmhglklkvk*fhhqkqvlwfykr*kkppk
pi*vaqlqmlllpfqhtlmivnvkplvmqvqlqv*---

---*ssts*nsnqwwfkqr*yrsyp*ri*sqr*s*s*t*ris*sqkqw*iplytklkki*
lnskitslnhklkklkkqskpfvmslakedgsaieaeikklhdltrxxfeta

Frame C:
frkl*ntlsynffsfilkfv*i*nvkiiksfkt*qfkcpkryssilfrf*nlwssywy*f
rynqflcccyarc*spcfrkc*rwsyhsiscclh*rqpknrwfts*ktngykc*kyiicy
*tfnws*i**snd*krydngti*dc*rskw*cmv*s*r*ndftirsrcygftkdernrrn
qfrwpsyrccyyrssil***stsshs*cryncrf---

---KAQQVRIQTSGGLSKDDIARILKESEANAEVDRKRKELVEARNNGESRCIPS*krfs
*iqrlplsttn*rn*ksspsrs*cplpkkmvqplklklknyti*lvxxlklp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD741 (CFD741Q) /CSM/CF/CFD7-B/CFD741Q.Seq.d/                       1826   0.0
VHQ334 (VHQ334Q) /CSM/VH/VHQ3-B/VHQ334Q.Seq.d/                       1233   0.0
VHE351 (VHE351Q) /CSM/VH/VHE3-C/VHE351Q.Seq.d/                       1233   0.0
SFB440 (SFB440Q) /CSM/SF/SFB4-B/SFB440Q.Seq.d/                       1233   0.0
CFH891 (CFH891Q) /CSM/CF/CFH8-D/CFH891Q.Seq.d/                       1233   0.0
CHJ768 (CHJ768Q) /CSM/CH/CHJ7-C/CHJ768Q.Seq.d/                       1229   0.0
CHH796 (CHH796Q) /CSM/CH/CHH7-D/CHH796Q.Seq.d/                       1215   0.0
SLG294 (SLG294Q) /CSM/SL/SLG2-D/SLG294Q.Seq.d/                       1203   0.0
SFK228 (SFK228Q) /CSM/SF/SFK2-B/SFK228Q.Seq.d/                       1203   0.0
CHS413 (CHS413Q) /CSM/CH/CHS4-A/CHS413Q.Seq.d/                       1199   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF539617|AF539617.1 Dictyostelium discoideum mitochondrial Hsp70 precursor (mhsp70) mRNA, complete cds; nuclear gene for mitochondrial product.  1138   0.0    3
AY170440|AY170440.1 Dictyostelium discoideum mitochondrial heat shock protein Hsp70 (hsp70) gene, complete cds; nuclear gene for mitochondrial product.   632   0.0    6
AW586153|AW586153.1 EST317776 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-52M15, mRNA sequence.    74   6e-30  5
AF419853|AF419853.1 Neocallimastix patriciarum heat shock protein 70 precursor (Hsp70) mRNA, complete cds.    76   7e-30  4
AW695785|AW695785.1 NF098G08ST1F1067 Developing stem Medicago truncatula cDNA clone NF098G08ST 5', mRNA sequence.    74   9e-30  5
BG646157|BG646157.1 EST507776 KV3 Medicago truncatula cDNA clone pKV3-48L11 5' end, mRNA sequence.    74   1e-29  5
BI267815|BI267815.1 NF111G06IN1F1052 Insect herbivory Medicago truncatula cDNA clone NF111G06IN 5', mRNA sequence.    74   3e-26  4
BF650576|BF650576.1 NF090H10EC1F1090 Elicited cell culture Medicago truncatula cDNA clone NF090H10EC 5', mRNA sequence.    74   3e-26  4
CG936433|CG936433.1 MBEDF75TFC mth2 Medicago truncatula genomic clone 31M6, genomic survey sequence.    74   6e-26  4
CG934924|CG934924.1 MBENB14TR mth2 Medicago truncatula genomic clone 6C4, genomic survey sequence.    74   7e-26  4
dna update 2004. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8I0H7) RecName: Full=Heat shock 70 kDa protein, mitochondrial;...   376   e-103
DQ524993_1(DQ524993|pid:none) Sparus aurata glucose regulated pr...   243   7e-63
BC044175_1(BC044175|pid:none) Danio rerio heat shock protein 9, ...   243   9e-63
BC083504_1(BC083504|pid:none) Danio rerio heat shock protein 9, ...   243   9e-63
BT059314_1(BT059314|pid:none) Salmo salar clone ssal-rgf-540-298...   239   8e-62
CP001016_127(CP001016|pid:none) Beijerinckia indica subsp. indic...   239   1e-61
AM910991_319(AM910991|pid:none) Plasmodium knowlesi strain H chr...   239   1e-61
AB306281_1(AB306281|pid:none) Alligator mississippiensis HSP70C ...   239   1e-61
AY326398_1(AY326398|pid:none) Mya arenaria mitochondrial mortali...   238   2e-61
EF028390_1(EF028390|pid:none) Lytechinus variegatus mortalin mRN...   238   3e-61
protein update 2009. 5.13
PSORT 

 psg: 0.63  gvh: 0.50  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for CFD741 is mit
5' end seq. ID CFD741F
5' end seq. 
>CFD741F.Seq
ATTTTCGAAAACTTTAAAACACACTTTCATATAATTTTTTTTCTTTTATATTAAAATTTG
TTTAAATATAAAATGTTAAGATCATTAAAAGCTTTAAAACTTAACAGTTTAAATGCCCAA
AAAGGTATTCGTCAATTCTGTTCAGATTCTAAAATCTCTGGTCAAGTTATTGGTATTGAT
TTAGGTACAACCAATTCTTGTGTTGCTGTTATGCAAGGTGCTGAAGCCCGTGTTTTAGAA
AATGCTGAAGGTGGTCGTACCACTCCATCAGTTGTTGCCTTCACTGAAGACAACCAAAAA
ATCGTTGGTTTACCAGCTAAAAGACAAATGGTTACAAATGCTGAAAATACATTATTTGCT
ACTAAACGTTTAATTGGTCGTAGATTTGATGATCCAATGACTAAAAAAGATATGACAATG
GTACCATATAAGATTGTTAAAGGTCCAAATGGTGATGCATGGTTTGAAGTTAAAGGTAAA
ATGATTTCACCATCAGAAGCAGGTGCTATGGTTTTACAAAAGATGAAAGAAACCGCCGAA
ACCAATTTAGGTGGCCCAGTTACAGATGCTGTTATTACCGTTCCAGCATACTTTGATGAT
AGTCAACGTCAAGCCACTCGTGATGCAGGTACAATTGCAGGTTTAA----------
Length of 5' end seq. 646
3' end seq. ID CFD741Z
3' end seq. 
>CFD741Z.Seq
----------GTAAAGCTCAACAAGTTAGAATTCAAACCAGTGGTGGTTTAAGCAAAGAT
GATATCGCTCGTATCCTTAAAGAATCTGAAGCCAACGCTGAAGTTGATCGTAAACGTAAA
GAATTAGTTGAAGCCAGAAACAATGGTGAATCCCGTTGTATACCAAGTTGAAAAAGATTT
AGTTGAATTCAAAGATTACCTCTCTCAACCACAAACTGAAGAAATTAAAAAAGCAGTCCA
AGCCGTTCGTGATGTCCCTTGCCAAAGAAGATGGTTCAGCCATTGAAGCTGAAATTAAAA
AATTACACGATTTAACTCGTTNCNNCTTTGAAACTGCCNA
Length of 3' end seq. 330
Connected seq. ID CFD741P
Connected seq. 
>CFD741P.Seq
ATTTTCGAAAACTTTAAAACACACTTTCATATAATTTTTTTTCTTTTATATTAAAATTTG
TTTAAATATAAAATGTTAAGATCATTAAAAGCTTTAAAACTTAACAGTTTAAATGCCCAA
AAAGGTATTCGTCAATTCTGTTCAGATTCTAAAATCTCTGGTCAAGTTATTGGTATTGAT
TTAGGTACAACCAATTCTTGTGTTGCTGTTATGCAAGGTGCTGAAGCCCGTGTTTTAGAA
AATGCTGAAGGTGGTCGTACCACTCCATCAGTTGTTGCCTTCACTGAAGACAACCAAAAA
ATCGTTGGTTTACCAGCTAAAAGACAAATGGTTACAAATGCTGAAAATACATTATTTGCT
ACTAAACGTTTAATTGGTCGTAGATTTGATGATCCAATGACTAAAAAAGATATGACAATG
GTACCATATAAGATTGTTAAAGGTCCAAATGGTGATGCATGGTTTGAAGTTAAAGGTAAA
ATGATTTCACCATCAGAAGCAGGTGCTATGGTTTTACAAAAGATGAAAGAAACCGCCGAA
ACCAATTTAGGTGGCCCAGTTACAGATGCTGTTATTACCGTTCCAGCATACTTTGATGAT
AGTCAACGTCAAGCCACTCGTGATGCAGGTACAATTGCAGGTTTAA----------GTAA
AGCTCAACAAGTTAGAATTCAAACCAGTGGTGGTTTAAGCAAAGATGATATCGCTCGTAT
CCTTAAAGAATCTGAAGCCAACGCTGAAGTTGATCGTAAACGTAAAGAATTAGTTGAAGC
CAGAAACAATGGTGAATCCCGTTGTATACCAAGTTGAAAAAGATTTAGTTGAATTCAAAG
ATTACCTCTCTCAACCACAAACTGAAGAAATTAAAAAAGCAGTCCAAGCCGTTCGTGATG
TCCCTTGCCAAAGAAGATGGTTCAGCCATTGAAGCTGAAATTAAAAAATTACACGATTTA
ACTCGTTNCNNCTTTGAAACTGCCNA
Length of connected seq. 976
Full length Seq ID -
Full length Seq. -
Length of full length seq. -