CFD726
Library CF
(Link to library)
Clone ID CFD726
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11642-1
Original site URL
Representative seq. ID CFD726P
(Link to Original site)
Representative DNA sequence
>CFD726 (CFD726Q) /CSM/CF/CFD7-B/CFD726Q.Seq.d/
ATAAACATATAAAAATAATTAATATTTATATCTATATAAGAGATATAGTAAAATAAATTA
AACAATGCAAGATAACGTATCACAAAGAAAATGGAATGTTGAATCATCAAAATCTGCAAA
CAATGCATTTAACCCAATTAGAAGAATTGTTGATAAGGGTGGATTTAAACCAAACCCAAA
TAAATCCACTATTTCATTATCAATTGGTGATCCATGTGTTTTTGGTAATTTAAATATTTT
AGATTATGCAAATGATTTATTAATTGAAAATATTAAATCAAGTAAATTTAATGGTTATCC
ACCTTCAACAGGATACGAAATTGCAAGGGAAGCAGTAGCAAAATATGTTGAAACACCAAC
ATCAAAATTAACATCAAAAGATATCATAGTTGCATCAGGAGCATCAGGTGCAATTGAATT
AGCAATTGGAGTACTTTTAAATGAAGGTGATAATATTTTAGTTCCAAAACCAGGTTTCCC
ATTGTATGAATGTACAAGTAAAACCAAATTTATTAATGTCAAACATTATAATTTATTGGA
GAAACXXXXXXXXXXCCAATTATCGCCNATGAAATTTATAGTGACTTGACATTTGGTNAA
CATAANTTCTATCCAATGGCATCATTAACTGATAAAGTACCAATCTTGTCAATTGGTGGT
ATTGCAAAGAGATTTTTAGTGCCAGGTTGGAGATTGGGTTGGGTTGCAATTCATGATCGT
GATAATATTTTCTCAAATGGTAGAATCATTGAAGGTTTGATATCTTTATCTCAAGTGATT
TTAGGTCCAAATTCATTGGTTCAATCAATTTTACCAAAACTTTTAGATCCACAAAATACT
CAAGTTAAAGAATGGTGTTCAACAATCACTAAAACTTTGGAATCTCATTCAAAATTAACC
GTTGATATGTTATCAAAAGCTAATGGTTTAAAACCTGTTTGTTCCTCTGGTACAATGTAT
CAAATGATTGAAATCGATTGTTCAAAATATGAAGACATCGCTGATGATAATGAATTTGTT
GGTAAATTACTCGAAGAACAATCTGTTTTCCTTTTACAAGGTACCGTTTTTTCACTTCCA
AATTTNCTTAGAATTGTTTTTTGTGCTNCCAATTGATAAATTAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
*tyknn*ylylykryskin*TMQDNVSQRKWNVESSKSANNAFNPIRRIVDKGGFKPNPN
KSTISLSIGDPCVFGNLNILDYANDLLIENIKSSKFNGYPPSTGYEIAREAVAKYVETPT
SKLTSKDIIVASGASGAIELAIGVLLNEGDNILVPKPGFPLYECTSKTKFINVKHYNLLE
K---

---PIIAXEIYSDLTFGXHXFYPMASLTDKVPILSIGGIAKRFLVPGWRLGWVAIHDRDN
IFSNGRIIEGLISLSQVILGPNSLVQSILPKLLDPQNTQVKEWCSTITKTLESHSKLTVD
MLSKANGLKPVCSSGTMYQMIEIDCSKYEDIADDNEFVGKLLEEQSVFLLQGTVFSLPNX
LRIVFCAXN**in


Translated Amino Acid sequence (All Frames)
Frame A:
ini*k*lifisi*ei**nklnnar*ritkkmec*iikickqci*pn*knc**gwi*tkpk
*ihyfiinw*smcfw*fkyfrlck*fin*ky*ik*i*wlstfnrirnckgssskic*ntn
ikinikryhscirsircn*isnwstfk*r**yfssktrfpiv*myk*nqiy*cqtl*fig
e---

---PIIAXEIYSDLTFGXHXFYPMASLTDKVPILSIGGIAKRFLVPGWRLGWVAIHDRDN
IFSNGRIIEGLISLSQVILGPNSLVQSILPKLLDPQNTQVKEWCSTITKTLESHSKLTVD
MLSKANGLKPVCSSGTMYQMIEIDCSKYEDIADDNEFVGKLLEEQSVFLLQGTVFSLPNX
LRIVFCAXN**in

Frame B:
*tyknn*ylylykryskin*TMQDNVSQRKWNVESSKSANNAFNPIRRIVDKGGFKPNPN
KSTISLSIGDPCVFGNLNILDYANDLLIENIKSSKFNGYPPSTGYEIAREAVAKYVETPT
SKLTSKDIIVASGASGAIELAIGVLLNEGDNILVPKPGFPLYECTSKTKFINVKHYNLLE
K---

---qlspmkfivt*hlvnixsiqwhh*likyqscqlvvlqrdf*cqvgdwvglqfmivii
fsqmveslkv*ylylk*f*vqihwfnqfyqnf*ihkilklkngvqqslklwnliqn*pli
cyqklmv*nlfvplvqcik*lksivqnmktslmimnllvnysknnlfsfykvpffhfqix
lelffvlpidkl

Frame C:
khikiiniyiyirdivk*ikqckityhkengmlnhqnlqtmhltqleellirvdlnqtqi
nplfhyqlvihvflvi*if*imqmiy*lkilnqvnlmvihlqqdtklqgkq*qnmlkhqh
qn*hqkis*lhqehqvqln*qleyf*mkviif*fqnqvshcmnvqvkpnllmsniiiywr
n---

---nyrx*nl**ldiwxt*xlsngiin**stnlvnwwyckeifsarleiglgcns*s**y
flkw*nh*rfdifissdfrskfigsinftktfrstkyss*rmvfnnh*nfgisfkinr*y
viks*wfktclflwynvsnd*nrlfki*rhr****icw*itrrticfpftryrfftskfx
*ncflcxqlin*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD726 (CFD726Q) /CSM/CF/CFD7-B/CFD726Q.Seq.d/ 2018 0.0
SSJ785 (SSJ785Q) /CSM/SS/SSJ7-D/SSJ785Q.Seq.d/ 1082 0.0
SFH603 (SFH603Q) /CSM/SF/SFH6-A/SFH603Q.Seq.d/ 1082 0.0
CFC349 (CFC349Q) /CSM/CF/CFC3-C/CFC349Q.Seq.d/ 1082 0.0
CFC143 (CFC143Q) /CSM/CF/CFC1-B/CFC143Q.Seq.d/ 1082 0.0
SFA640 (SFA640Q) /CSM/SF/SFA6-B/SFA640Q.Seq.d/ 1076 0.0
SFD662 (SFD662Q) /CSM/SF/SFD6-C/SFD662Q.Seq.d/ 1074 0.0
AFD859 (AFD859Q) /CSM/AF/AFD8-C/AFD859Q.Seq.d/ 1063 0.0
SFG244 (SFG244Q) /CSM/SF/SFG2-B/SFG244Q.Seq.d/ 1047 0.0
CHA803 (CHA803Q) /CSM/CH/CHA8-A/CHA803Q.Seq.d/ 1047 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 42 2e-09 16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 1e-05 17
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 32 6e-05 18
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 36 1e-04 25
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 38 2e-04 15
BE029607|BE029607.1 kp29d08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:F42D1.2 CE10298 TYROSINE AMINOTRANSFERASE ;, mRNA sequence. 58 3e-04 1
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 32 4e-04 16
AP004828|AP004828.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 7/10. 38 8e-04 14
AR274513|AR274513.1 Sequence 1 from patent US 6506581. 34 0.001 29
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 0.010 20
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K95) RecName: Full=Tyrosine aminotransferase; Short... 359 8e-98
BC125947_1(BC125947|pid:none) Danio rerio tyrosine aminotransfer... 159 2e-78
AF163863_1(AF163863|pid:none) Mustela vison tyrosine aminotransf... 152 6e-74
(Q58CZ9) RecName: Full=Tyrosine aminotransferase; Short... 152 1e-73
(P17735) RecName: Full=Tyrosine aminotransferase; Short... 151 5e-73
BC130534_1(BC130534|pid:none) Homo sapiens tyrosine aminotransfe... 151 5e-73
BC074414_1(BC074414|pid:none) Xenopus laevis hypothetical protei... 154 6e-73
BC146179_1(BC146179|pid:none) Bos taurus tyrosine aminotransfera... 152 1e-70
AM475255_1(AM475255|pid:none) Vitis vinifera contig VV78X153612.... 116 3e-48
AB182275_1(AB182275|pid:none) Oryza sativa Japonica Group OsNAAT... 102 9e-40
protein update 2009. 5.13
PSORT

psg: 0.59 gvh: 0.43 alm: 0.32 top: 0.27 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: nuclear
20.0 %: endoplasmic reticulum
16.0 %: cytoplasmic
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CFD726 is mit

5' end seq. ID CFD726F
5' end seq.
>CFD726F.Seq
ATAAACATATAAAAATAATTAATATTTATATCTATATAAGAGATATAGTAAAATAAATTA
AACAATGCAAGATAACGTATCACAAAGAAAATGGAATGTTGAATCATCAAAATCTGCAAA
CAATGCATTTAACCCAATTAGAAGAATTGTTGATAAGGGTGGATTTAAACCAAACCCAAA
TAAATCCACTATTTCATTATCAATTGGTGATCCATGTGTTTTTGGTAATTTAAATATTTT
AGATTATGCAAATGATTTATTAATTGAAAATATTAAATCAAGTAAATTTAATGGTTATCC
ACCTTCAACAGGATACGAAATTGCAAGGGAAGCAGTAGCAAAATATGTTGAAACACCAAC
ATCAAAATTAACATCAAAAGATATCATAGTTGCATCAGGAGCATCAGGTGCAATTGAATT
AGCAATTGGAGTACTTTTAAATGAAGGTGATAATATTTTAGTTCCAAAACCAGGTTTCCC
ATTGTATGAATGTACAAGTAAAACCAAATTTATTAATGTCAAACATTATAATTTATTGGA
GAAAC----------
Length of 5' end seq. 545
3' end seq. ID CFD726Z
3' end seq.
>CFD726Z.Seq
----------CCAATTATCGCCNATGAAATTTATAGTGACTTGACATTTGGTNAACATAA
NTTCTATCCAATGGCATCATTAACTGATAAAGTACCAATCTTGTCAATTGGTGGTATTGC
AAAGAGATTTTTAGTGCCAGGTTGGAGATTGGGTTGGGTTGCAATTCATGATCGTGATAA
TATTTTCTCAAATGGTAGAATCATTGAAGGTTTGATATCTTTATCTCAAGTGATTTTAGG
TCCAAATTCATTGGTTCAATCAATTTTACCAAAACTTTTAGATCCACAAAATACTCAAGT
TAAAGAATGGTGTTCAACAATCACTAAAACTTTGGAATCTCATTCAAAATTAACCGTTGA
TATGTTATCAAAAGCTAATGGTTTAAAACCTGTTTGTTCCTCTGGTACAATGTATCAAAT
GATTGAAATCGATTGTTCAAAATATGAAGACATCGCTGATGATAATGAATTTGTTGGTAA
ATTACTCGAAGAACAATCTGTTTTCCTTTTACAAGGTACCGTTTTTTCACTTCCAAATTT
NCTTAGAATTGTTTTTTGTGCTNCCAATTGATAAATTAAC
Length of 3' end seq. 570
Connected seq. ID CFD726P
Connected seq.
>CFD726P.Seq
ATAAACATATAAAAATAATTAATATTTATATCTATATAAGAGATATAGTAAAATAAATTA
AACAATGCAAGATAACGTATCACAAAGAAAATGGAATGTTGAATCATCAAAATCTGCAAA
CAATGCATTTAACCCAATTAGAAGAATTGTTGATAAGGGTGGATTTAAACCAAACCCAAA
TAAATCCACTATTTCATTATCAATTGGTGATCCATGTGTTTTTGGTAATTTAAATATTTT
AGATTATGCAAATGATTTATTAATTGAAAATATTAAATCAAGTAAATTTAATGGTTATCC
ACCTTCAACAGGATACGAAATTGCAAGGGAAGCAGTAGCAAAATATGTTGAAACACCAAC
ATCAAAATTAACATCAAAAGATATCATAGTTGCATCAGGAGCATCAGGTGCAATTGAATT
AGCAATTGGAGTACTTTTAAATGAAGGTGATAATATTTTAGTTCCAAAACCAGGTTTCCC
ATTGTATGAATGTACAAGTAAAACCAAATTTATTAATGTCAAACATTATAATTTATTGGA
GAAAC----------CCAATTATCGCCNATGAAATTTATAGTGACTTGACATTTGGTNAA
CATAANTTCTATCCAATGGCATCATTAACTGATAAAGTACCAATCTTGTCAATTGGTGGT
ATTGCAAAGAGATTTTTAGTGCCAGGTTGGAGATTGGGTTGGGTTGCAATTCATGATCGT
GATAATATTTTCTCAAATGGTAGAATCATTGAAGGTTTGATATCTTTATCTCAAGTGATT
TTAGGTCCAAATTCATTGGTTCAATCAATTTTACCAAAACTTTTAGATCCACAAAATACT
CAAGTTAAAGAATGGTGTTCAACAATCACTAAAACTTTGGAATCTCATTCAAAATTAACC
GTTGATATGTTATCAAAAGCTAATGGTTTAAAACCTGTTTGTTCCTCTGGTACAATGTAT
CAAATGATTGAAATCGATTGTTCAAAATATGAAGACATCGCTGATGATAATGAATTTGTT
GGTAAATTACTCGAAGAACAATCTGTTTTCCTTTTACAAGGTACCGTTTTTTCACTTCCA
AATTTNCTTAGAATTGTTTTTTGTGCTNCCAATTGATAAATTAAC
Length of connected seq. 1115
Full length Seq ID -
Full length Seq. -
Length of full length seq. -