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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD710
Library CF
(Link to library)
Clone ID CFD710
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFD710F
(Link to Original site)
Representative DNA sequence 
>CFD710 (CFD710Q) /CSM/CF/CFD7-A/CFD710Q.Seq.d/
GTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAA
TTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAA
AXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
vvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Frame B:
*yfvhiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame C:
silfifklnintikks*n*ickinl*qklvi*kkknqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH486 (SLH486Q) /CSM/SL/SLH4-D/SLH486Q.Seq.d/                        149   1e-35
SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        149   1e-35
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        149   1e-35
SHL201 (SHL201Q) /CSM/SH/SHL2-A/SHL201Q.Seq.d/                        149   1e-35
SHG423 (SHG423Q) /CSM/SH/SHG4-A/SHG423Q.Seq.d/                        149   1e-35
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        149   1e-35
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/                        149   1e-35
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        149   1e-35
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        149   1e-35
SFL248 (SFL248Q) /CSM/SF/SFL2-B/SFL248Q.Seq.d/                        149   1e-35
own update 2002.11.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    82   4e-29  2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    82   2e-28  4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   9e-27  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    82   9e-27  6
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    82   2e-12  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   8e-12  1
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.022  5
AC137670|AC137670.5 Medicago truncatula clone mth2-14g3, WORKING DRAFT SEQUENCE, 15 unordered pieces.    28   0.033  9
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.036  4
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.036  2
dna update 2004. 1.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 69,233,276
protein update 2009. 5.13
PSORT -
5' end seq. ID CFD710F
5' end seq. 
>CFD710F.Seq
GTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAA
TTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAA
A----------
Length of 5' end seq. 121
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -