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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD702
Library CF
(Link to library)
Clone ID CFD702
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID CFD702P
(Link to Original site)
Representative DNA sequence 
>CFD702 (CFD702Q) /CSM/CF/CFD7-A/CFD702Q.Seq.d/
AGTTAAAATCTTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAATAATATT
ATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAA
ATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATT
TTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCC
AACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCT
TTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATG
GCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCC
AAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAAT
CCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATG
TACTGCATGTTTTGATTXXXXXXXXXXAATGATGGGTATCTTGAATTGCAAAGAGAAAAA
GAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAA
CATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCA
AGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATA
CTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGC
AAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTT
AACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGAT
TCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTC
TATAGAAATGAATTNCTATGCTATTACNCTANCTGGTTATGCATGCTTGCAAATAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
VKIFFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRF
YEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPQW
PARNHATALRAGTVSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNATC
TACFD---

---NDGYLELQREKEREQMQRDIERKAAAEESRKHKSTIFQYIMRDGKLEREFSSASWGP
YSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTLNINILGFKEIISNTQVNLLTKG
EKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNEXLCYYXXWLCMLANS
Translated Amino Acid sequence (All Frames) 
Frame A:
s*nlffycfkyff*neknniifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*i
l*ttrrwflipkr*ihktipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlptm
askkpcdcikswyr*flpfskndircsrrsksrcilpkfnpfkpiwklykil*kyk*cnm
ycmf*---

---NDGYLELQREKEREQMQRDIERKAAAEESRKHKSTIFQYIMRDGKLEREFSSASWGP
YSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTLNINILGFKEIISNTQVNLLTKG
EKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNEXLCYYXXWLCMLANS

Frame B:
VKIFFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRF
YEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPQW
PARNHATALRAGTVSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNATC
TACFD---

---mmgilnckekkkenkcnvi*reklqqkspeninqpfsnil*emvnwkensqvqvgvh
iqrrrlnimkldqylemfyslnvqldpivyqvkakepststf*vlkksfqilklts*pkv
kkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiemnxyaitlxgyaclqi

Frame C:
lksffllf*ifflk*kk*yyf*qyylyyylvklnhihl*nvwigilvqihvqhtqetidf
mnnkamvsyskevnsqnhtqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfahng
qqetmrlh*elvplvstflqk*hqmlpqiqvkmysskiqsiqahletvqnimkiqimqhv
lhvli---

---*wvs*iakrkrkrtnat*yrekscsrrvqkt*inhfpiyyerw*igkrilkcklgsi
fkegg*il*n*tntwkcfil*mcnwiqlfik*rqknpqhqhfrf*rnhfkyss*plnqr*
knstlnfirtih*fiiy**w*fiqyn*rstskil*k*ixmllxxlvmhack*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK281 (SFK281Q) /CSM/SF/SFK2-D/SFK281Q.Seq.d/                        999   0.0
SFI679 (SFI679Q) /CSM/SF/SFI6-D/SFI679Q.Seq.d/                        999   0.0
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                        999   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                        999   0.0
SFE718 (SFE718Q) /CSM/SF/SFE7-A/SFE718Q.Seq.d/                        999   0.0
SFE191 (SFE191Q) /CSM/SF/SFE1-D/SFE191Q.Seq.d/                        999   0.0
SFD893 (SFD893Q) /CSM/SF/SFD8-D/SFD893Q.Seq.d/                        999   0.0
SFD654 (SFD654Q) /CSM/SF/SFD6-C/SFD654Q.Seq.d/                        999   0.0
SFB309 (SFB309Q) /CSM/SF/SFB3-A/SFB309Q.Seq.d/                        999   0.0
SFB148 (SFB148Q) /CSM/SF/SFB1-B/SFB148Q.Seq.d/                        999   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   3e-04  12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   0.001  22
AC131557|AC131557.4 Rattus norvegicus clone CH230-8O19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   0.004  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.004  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.011  15
AC106806|AC106806.2 Homo sapiens chromosome 5 clone RP11-510I6, complete sequence.    38   0.011  10
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.023  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.030  18
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   0.053  13
AC116940|AC116940.2 Pan troglodytes clone RP43-166L2, WORKING DRAFT SEQUENCE.    50   0.066  1
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844506_202(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.23
AF124332_1(AF124332|pid:none) Danio rerio double-stranded RNA-sp...    37   1.1
CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    35   4.4
AF506894_1(AF506894|pid:none) Papaya ringspot virus isolate THW-...    34   7.5
BC095969_1(BC095969|pid:none) Mus musculus signal-induced prolif...    34   9.7
AK044193_1(AK044193|pid:none) Mus musculus 10 days neonate corte...    34   9.7
AM920431_1106(AM920431|pid:none) Penicillium chrysogenum Wiscons...    34   9.7
CP000939_1360(CP000939|pid:none) Clostridium botulinum B1 str. O...    34   9.8
protein update 2009. 5.13
PSORT 

 psg: 0.94  gvh: 0.72  alm: 0.43  top: 0.47  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for CFD702 is exc
5' end seq. ID CFD702F
5' end seq. 
>CFD702F.Seq
AGTTAAAATCTTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAATAATATT
ATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAA
ATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATT
TTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCC
AACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCT
TTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATG
GCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCC
AAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAAT
CCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATG
TACTGCATGTTTTGATT----------
Length of 5' end seq. 557
3' end seq. ID CFD702Z
3' end seq. 
>CFD702Z.Seq
----------AATGATGGGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACAAATGCA
ACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTT
CCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCC
ATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATT
CTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACCCTCAACAT
CAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGG
TGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGA
TGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAATGAATTNCT
ATGCTATTACNCTANCTGGTTATGCATGCTTGCAAATAGT
Length of 3' end seq. 510
Connected seq. ID CFD702P
Connected seq. 
>CFD702P.Seq
AGTTAAAATCTTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAATAATATT
ATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAA
ATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATT
TTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCC
AACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCAATCT
TTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCACAATG
GCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCC
AAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATTCAAT
CCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAACATG
TACTGCATGTTTTGATT----------AATGATGGGTATCTTGAATTGCAAAGAGAAAAA
GAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAA
CATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCA
AGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATA
CTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGC
AAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTT
AACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGAT
TCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTC
TATAGAAATGAATTNCTATGCTATTACNCTANCTGGTTATGCATGCTTGCAAATAGT
Length of connected seq. 1067
Full length Seq ID -
Full length Seq. -
Length of full length seq. -