>CFD696 (CFD696Q) /CSM/CF/CFD6-D/CFD696Q.Seq.d/
AATTTAAATTAACAAAGATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAA
TTCCACATGATTCAATAAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTA
CTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAAT
CTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCA
CAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCC
CAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAA
AGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCT
CAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGT
CAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTAT
TCGCTGAAGCCACXXXXXXXXXX

fkltkilahrfqqrffy*SIPHDSIKGKMKLLILTLFLATIVLAQALTVPLNFHQASRES
RRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSK
KCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLF
AEA---

Frame A:
nln*qrfwrtdfnkdffinqfhmiq*rgk*nylf*lyf*lllf*lkl*qyh*tsiklqen
leeefhkngqtdyllsmlvpqsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhq
rnvqslllhviyitnitavpqahmsptelispsntvvvlcqvlslkipsllvh*llkiny
slkp---


Frame B:
i*inkdfgaqistkifllinst*fnkgeneityfnfifsyycfsssfnstiklpssfkri
*kksstkmvkqiicsqcwyhnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsik
emsnhcccm*ft*qi*qrclkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsii
r*s---


Frame C:
fkltkilahrfqqrffy*SIPHDSIKGKMKLLILTLFLATIVLAQALTVPLNFHQASRES
RRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSK
KCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLF
AEA---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG678 (SFG678Q) /CSM/SF/SFG6-D/SFG678Q.Seq.d/                       1055   0.0
SFE532 (SFE532Q) /CSM/SF/SFE5-B/SFE532Q.Seq.d/                       1055   0.0
SFB665 (SFB665Q) /CSM/SF/SFB6-C/SFB665Q.Seq.d/                       1055   0.0
SFB424 (SFB424Q) /CSM/SF/SFB4-A/SFB424Q.Seq.d/                       1055   0.0
SFA510 (SFA510Q) /CSM/SF/SFA5-A/SFA510Q.Seq.d/                       1055   0.0
CHA784 (CHA784Q) /CSM/CH/CHA7-D/CHA784Q.Seq.d/                       1055   0.0
CFF810 (CFF810Q) /CSM/CF/CFF8-A/CFF810Q.Seq.d/                       1055   0.0
CFD696 (CFD696Q) /CSM/CF/CFD6-D/CFD696Q.Seq.d/                       1055   0.0
CFB887 (CFB887Q) /CSM/CF/CFB8-D/CFB887Q.Seq.d/                       1055   0.0
AFN632 (AFN632Q) /CSM/AF/AFN6-B/AFN632Q.Seq.d/                       1055   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D.    934   0.0    1
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2.   809   0.0    2
AX059531|AX059531.1 Sequence 264 from Patent WO0055325.            62   6e-06  2
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence.    62   9e-06  1
AF372974|AF372974.1 Arabidopsis thaliana AT4g04460/T26N6_7 mRNA, complete cds.    62   9e-06  1
CB264579|CB264579.1 51-E015023-035-004-F13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000F134Q 5-PRIME, mRNA sequence.    62   9e-06  1
AL765461|AL765461.1 Arabidopsis thaliana T-DNA flanking sequence GK-139E08-012875.    62   9e-06  1
AL762930|AL762930.1 Arabidopsis thaliana T-DNA flanking sequence GK-030C11-011522.    62   9e-06  1
AL161500|AL161500.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12.    62   9e-06  1
BE525959|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence.    62   9e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ...   155   7e-37
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ...   154   2e-36
DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c...   153   3e-36
AF454831_1(AF454831|pid:none) Apriona germari cathepsin D mRNA, ...   153   3e-36
(Q03168) RecName: Full=Lysosomal aspartic protease;          EC=...   150   2e-35
(O93428) RecName: Full=Cathepsin D;          EC=3.4.23.5; Flags:...   148   8e-35
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM...   148   1e-34
CP001577_36(CP001577|pid:none) Micromonas sp. RCC299 chromosome ...   147   1e-34
BT043515_1(BT043515|pid:none) Salmo salar clone HM4_0887 catheps...   146   4e-34
FN316575_1(FN316575|pid:none) Schistosoma japonicum isolate Anhu...   145   5e-34

 psg: 0.86  gvh: 0.77  alm: 0.47  top: 0.60  tms: 0.00  mit: 0.32  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: nuclear

>> prediction for CFD696 is exc

>CFD696F.Seq
AATTTAAATTAACAAAGATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAA
TTCCACATGATTCAATAAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTA
CTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAAT
CTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCA
CAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCC
CAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAA
AGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCT
CAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGT
CAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTAT
TCGCTGAAGCCAC----------