>CFD684 (CFD684Q) /CSM/CF/CFD6-D/CFD684Q.Seq.d/
ATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGGGNNNTT
TTTTTTNNNAAAAAAAAAAAAANNAANGGGTTTTTNNNNTTTTTTNCCCCCCCCCCCCNN
NNAAAAAAXXXXXXXXXX

YKFGKKKKKKKKKKKKXGXFFXXKKKKXXGFXXFXPPPPXXK---

Frame A:
i*vwkkkkkkkkkkkkkxxxffxkkkkxxgfxxffxpppxxk---


Frame B:
YKFGKKKKKKKKKKKKXGXFFXXKKKKXXGFXXFXPPPPXXK---


Frame C:
islekkkkkkkkkkkkxgxffxxkkkxxxvfxxfxppppxk---

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138
Number of Sequences: 97611
Number of extensions: 138
Number of successful extensions: 69
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 0
length of query: 138
length of database: 80,480,566
effective HSP length: 17
effective length of query: 121
effective length of database: 78,821,179
effective search space: 9537362659
effective search space used: 9537362659
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 42,439
Number of Sequences: 31773783
Number of extensions: 42439
Number of successful extensions: 5911
Number of sequences better than 10.0: 0
length of query: 138
length of database: U,072,735,791
effective HSP length: 21
effective length of query: 117
effective length of database: T,405,486,348
effective search space: 4259441902716
effective search space used: 4259441902716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 109,855,067

 psg: 0.31  gvh: 0.26  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 1.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic

>> prediction for CFD684 is nuc

>CFD684F.Seq
ATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGGGNNNTT
TTTTTTNNNAAAAAAAAAAAAANNAANGGGTTTTTNNNNTTTTTTNCCCCCCCCCCCCNN
NNAAAAAA----------