CFD668
Library CF
(Link to library)
Clone ID CFD668
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16445-1
Original site URL
Representative seq. ID CFD668F
(Link to Original site)
Representative DNA sequence
>CFD668 (CFD668Q) /CSM/CF/CFD6-C/CFD668Q.Seq.d/
AATTTAATTTAAAATAAAAACATATTACATACAAATAAAATGAATAAAATTTTAACCCGT
AGTTTTAGTACTGGTGCAAATTTCTTTGCCTCTGGTAAAGGTAAAGCACCAGTTAGAGTT
GCCATTACTGGTGCCAGTGGTCAAATTGGTTATCAATTATTATTCAGAATTGCCAGTGGT
GATATGTTAGGTAAAGATCAACCAATCATTCTCCAATGTTTAGAATTACCAGGTGCAATG
AACTCATTAAAAGGTGTTTCAATGGAATTGGATGATTGTGCATTCCCATTGCTCAAAGGT
ATTGTTCAAAGTGATAAACCAGAGGAAGCNTTTCGCTGGTGCAGACTATGCATTATTAGT
TGGTGCTCGTCCAAGAAGCAAGGGTATGGAGCGTGGTGACCTTTTAAAAGCAAATGCTGA
AATTTTCTCTGTTCAAGGTAAAGCATTAGACAAAAGTGCTAATCGTGACACTTTAAGAGT
TTTAGTTGTAGGTAACCCAGCCAATACCAACGCATTAATTGCCGCCCGTAATGCACCAAA
TATTGACCCAAAACGTTTCTCTGCCATGACTCGTTTAGATCACXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
nli*NKNILHTNKMNKILTRSFSTGANFFASGKGKAPVRVAITGASGQIGYQLLFRIASG
DMLGKDQPIILQCLELPGAMNSLKGVSMELDDCAFPLLKGIVQSDKPEEAFRWCRLCIIS
WCSSKKQGYGAW*pfkskc*nflcsr*sirqkc*s*hfksfscr*psqyqrincrp*ctk
y*pktflchdsfrs---


Translated Amino Acid sequence (All Frames)
Frame A:
nli*NKNILHTNKMNKILTRSFSTGANFFASGKGKAPVRVAITGASGQIGYQLLFRIASG
DMLGKDQPIILQCLELPGAMNSLKGVSMELDDCAFPLLKGIVQSDKPEEAFRWCRLCIIS
WCSSKKQGYGAW*pfkskc*nflcsr*sirqkc*s*hfksfscr*psqyqrincrp*ctk
y*pktflchdsfrs---


Frame B:
i*fkiktyyiqik*ikf*pvvlvlvqislplvkvkhqlelpllvpvvklvinyyselpvv
ic*vkinqsfsnv*nyqvq*th*kvfqwnwmivhshcskvlfkvinqrkxfagadyallv
garprskgmergdllkanaeifsvqgkaldksanrdtlrvlvvgnpantnaliaarnapn
idpkrfsamtrld---


Frame C:
fnlk*khityk*ne*nfnp*f*ywckflclw*r*sts*schywcqwsnwlsiiiqncqw*
yvr*rstnhspmfritrcnelikrcfngig*lcipiaqrycsk**trgsxslvqtmhy*l
vlvqearvwsvvtf*kqmlkfslfkvkh*tkvlivtl*ef*l*vtqpipth*lppvmhqi
ltqnvslp*lv*i---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD668 (CFD668Q) /CSM/CF/CFD6-C/CFD668Q.Seq.d/ 1049 0.0
VSD532 (VSD532Q) /CSM/VS/VSD5-B/VSD532Q.Seq.d/ 1025 0.0
VHN148 (VHN148Q) /CSM/VH/VHN1-B/VHN148Q.Seq.d/ 1025 0.0
VFK569 (VFK569Q) /CSM/VF/VFK5-C/VFK569Q.Seq.d/ 1025 0.0
VFI317 (VFI317Q) /CSM/VF/VFI3-A/VFI317Q.Seq.d/ 1025 0.0
VFH801 (VFH801Q) /CSM/VF/VFH8-A/VFH801Q.Seq.d/ 1025 0.0
VFF865 (VFF865Q) /CSM/VF/VFF8-C/VFF865Q.Seq.d/ 1025 0.0
VFF391 (VFF391Q) /CSM/VF/VFF3-D/VFF391Q.Seq.d/ 1025 0.0
VFD443 (VFD443Q) /CSM/VF/VFD4-B/VFD443Q.Seq.d/ 1025 0.0
VFC762 (VFC762Q) /CSM/VF/VFC7-C/VFC762Q.Seq.d/ 1025 0.0

own update 2002.11.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AR317645|AR317645.1 Sequence 195 from patent US 6562958. 38 8e-04 3
CB408082|CB408082.1 IPG013F11_249066 JH III-treated male I. pini midguts Ips pini cDNA clone IPG013F11 5, mRNA sequence. 38 0.23 2
AC006759|AC006759.3 Caenorhabditis elegans clone Y40G12, WORKING DRAFT SEQUENCE, 8 unordered pieces. 36 0.31 2
AF125955|AF125955.2 Caenorhabditis elegans cosmid F46E10, complete sequence. 36 0.33 2
AU206290|AU206290.1 Caenorhabditis elegans cDNA clone:yk862a12 : 5' end, single read. 36 0.39 2
BJ126369|BJ126369.1 Caenorhabditis elegans cDNA clone:yk1334c05 : 5' end, single read. 36 0.39 2
BJ104975|BJ104975.1 Caenorhabditis elegans cDNA clone:yk1067g11 : 5' end, single read. 36 0.39 2
BJ121510|BJ121510.1 Caenorhabditis elegans cDNA clone:yk1277b08 : 5' end, single read. 36 0.39 2
AU199493|AU199493.1 Caenorhabditis elegans cDNA clone:yk765f12 : 5' end, single read. 36 0.39 2
BJ126488|BJ126488.1 Caenorhabditis elegans cDNA clone:yk1335f04 : 5' end, single read. 36 0.40 2
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q0ABE6) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 122 2e-56
CP000934_1926(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 118 5e-54
(A5WGM2) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 124 8e-54
(Q4FQU7) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 120 7e-53
(Q1Q932) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 119 2e-52
(Q3BWU8) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 112 8e-51
(Q6F7X1) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 114 4e-50
(A3M928) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 113 5e-50
CP000539_2676(CP000539|pid:none) Acidovorax sp. JS42, complete g... 111 1e-49
CP000884_2420(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 110 2e-49
protein update 2009. 5.13
PSORT

psg: 0.60 gvh: 0.46 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
28.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for CFD668 is mit

5' end seq. ID CFD668F
5' end seq.
>CFD668F.Seq
AATTTAATTTAAAATAAAAACATATTACATACAAATAAAATGAATAAAATTTTAACCCGT
AGTTTTAGTACTGGTGCAAATTTCTTTGCCTCTGGTAAAGGTAAAGCACCAGTTAGAGTT
GCCATTACTGGTGCCAGTGGTCAAATTGGTTATCAATTATTATTCAGAATTGCCAGTGGT
GATATGTTAGGTAAAGATCAACCAATCATTCTCCAATGTTTAGAATTACCAGGTGCAATG
AACTCATTAAAAGGTGTTTCAATGGAATTGGATGATTGTGCATTCCCATTGCTCAAAGGT
ATTGTTCAAAGTGATAAACCAGAGGAAGCNTTTCGCTGGTGCAGACTATGCATTATTAGT
TGGTGCTCGTCCAAGAAGCAAGGGTATGGAGCGTGGTGACCTTTTAAAAGCAAATGCTGA
AATTTTCTCTGTTCAAGGTAAAGCATTAGACAAAAGTGCTAATCGTGACACTTTAAGAGT
TTTAGTTGTAGGTAACCCAGCCAATACCAACGCATTAATTGCCGCCCGTAATGCACCAAA
TATTGACCCAAAACGTTTCTCTGCCATGACTCGTTTAGATCAC----------
Length of 5' end seq. 583
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -