CFD665
Library CF
(Link to library)
Clone ID CFD665
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID CFD665Z
(Link to Original site)
Representative DNA sequence
>CFD665 (CFD665Q) /CSM/CF/CFD6-C/CFD665Q.Seq.d/
XXXXXXXXXXGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGC
CGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGC
CTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATC
CGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTG
GGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGA
TGAAGANNTCAATGGTAATGATNNATTTGAAATTGATGTTGAAGGTGATTTCCAAGAANA
TGATTNCGAAGAAGAATANGCATTNTATTAAANNCAACTTTTTTTCANAAAAANATAATA
ATAATAATTTAATAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ECCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSD
EESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEXXNGNDXFEIDVEGDFQEXD
XEEEXAXY*xqlffxkx****fnn


Translated Amino Acid sequence (All Frames)
Frame A:
---knvvqlfqsvsihqllphpllplqlhqlvtqlpqqlph*slvpqvvvvvwvhlvvdp
mknqviqmlylvslktifsgvimmntlvittvmlmkkilmkxsmvmxxlklmlkviskxm
ixkknxhxikxnffsxkxnnnnli


Frame B:
---rmlsnysnlyqsinycrihychyncinsslnclnnclishwyhkwwwwygfiwwsir
*rik*skcytwsl*rryflg****il***lplc**rry**rxqw**xi*n*c*r*fprx*
xrrrixixlxxtffxkxiiiii**


Frame C:
---ECCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSD
EESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEXXNGNDXFEIDVEGDFQEXD
XEEEXAXY*xqlffxkx****fnn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 710 0.0
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/ 710 0.0
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/ 710 0.0
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/ 710 0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 710 0.0
SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/ 710 0.0
SSF391 (SSF391Q) /CSM/SS/SSF3-D/SSF391Q.Seq.d/ 710 0.0
SSF386 (SSF386Q) /CSM/SS/SSF3-D/SSF386Q.Seq.d/ 710 0.0
SSF203 (SSF203Q) /CSM/SS/SSF2-A/SSF203Q.Seq.d/ 710 0.0
SSE674 (SSE674Q) /CSM/SS/SSE6-D/SSE674Q.Seq.d/ 710 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 710 0.0 7
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 710 0.0 2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 40 4e-06 8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 5e-05 8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 2e-04 5
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 50 7e-04 5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.001 7
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 0.003 7
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 0.004 7
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 0.010 7
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 104 1e-21

protein update 2008.12.25
PSORT

psg: 0.75 gvh: 0.53 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: cytoskeletal

>> prediction for CFD665 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD665Z
3' end seq.
>CFD665Z.Seq
----------GAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGC
CGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGC
CTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATC
CGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTG
GGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGA
TGAAGANNTCAATGGTAATGATNNATTTGAAATTGATGTTGAAGGTGATTTCCAAGAANA
TGATTNCGAAGAAGAATANGCATTNTATTAAANNCAACTTTTTTTCANAAAAANATAATA
ATAATAATTTAATAAC
Length of 3' end seq. 426
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -