>CFD659 (CFD659Q) /CSM/CF/CFD6-C/CFD659Q.Seq.d/
ATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTT
CTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAAT
CAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAG
GAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCA
AAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAA
GATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGG
AAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATT
GTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAA
TGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAA
TCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTG
GTGTCACCXXXXXXXXXX

IILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRG
AFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKE
VPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPI
ISGCYNTMGQTSENVAERFGV---

Frame A:
i*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklke
ehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqr
kyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriq
slvvvttlwvkplkmsqsvlvs---


Frame B:
ynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*kr
siqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftkg
stmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgsn
h*wllqhygsnl*kcrrafwch---


Frame C:
IILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRG
AFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKE
VPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPI
ISGCYNTMGQTSENVAERFGV---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/                       1205   0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/                       1205   0.0
SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/                       1205   0.0
SFD567 (SFD567Q) /CSM/SF/SFD5-C/SFD567Q.Seq.d/                       1205   0.0
SFD243 (SFD243Q) /CSM/SF/SFD2-B/SFD243Q.Seq.d/                       1205   0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/                       1205   0.0
CFD659 (CFD659Q) /CSM/CF/CFD6-C/CFD659Q.Seq.d/                       1205   0.0
CFC614 (CFC614Q) /CSM/CF/CFC6-A/CFC614Q.Seq.d/                       1205   0.0
CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/                       1205   0.0
CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/                       1205   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   983   0.0    7
BF519425|BF519425.1 EST456888 DSIL Medicago truncatula cDNA clone pDSIL-20L15, mRNA sequence.    40   3e-04  3
BE323358|BE323358.2 NF002H04PL1F1032 Phosphate starved leaf Medicago truncatula cDNA clone NF002H04PL 5', mRNA sequence.    40   3e-04  3
BF650514|BF650514.1 NF097F05EC1F1045 Elicited cell culture Medicago truncatula cDNA clone NF097F05EC 5', mRNA sequence.    40   4e-04  3
AW774616|AW774616.1 EST333767 KV3 Medicago truncatula cDNA clone pKV3-23K13, mRNA sequence.    40   4e-04  3
BI264284|BI264284.1 NF120F03PL1F1031 Phosphate starved leaf Medicago truncatula cDNA clone NF120F03PL 5', mRNA sequence.    40   4e-04  3
BG586707|BG586707.1 EST488475 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-44F11 5' end, mRNA sequence.    40   4e-04  3
BG647334|BG647334.1 EST508953 HOGA Medicago truncatula cDNA clone pHOGA-16H23 5' end, mRNA sequence.    40   5e-04  3
CB893116|CB893116.1 EST645908 HOGA Medicago truncatula cDNA clone HOGA-26H20, mRNA sequence.    40   5e-04  3
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    40   5e-04  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   384   e-105
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   200   3e-50
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   200   3e-50
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   199   7e-50
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   197   2e-49
BT051821_1(BT051821|pid:none) Medicago truncatula clone MTYF5_F6...   194   2e-48
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.       192   6e-48
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   192   8e-48
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   191   1e-47
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...   191   2e-47

 psg: 0.61  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CFD659 is nuc

>CFD659F.Seq
ATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTT
CTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAAT
CAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAG
GAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCA
AAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAA
GATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGG
AAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATT
GTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAA
TGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAA
TCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTG
GTGTCACC----------