>CFD654 (CFD654Q) /CSM/CF/CFD6-C/CFD654Q.Seq.d/
AATTCTGACATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAGTTTTAGT
AATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTACTGATTT
AAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAATCAATTA
TCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTTTCCAACA
AAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCATGATTAA
TGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAA
ACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAAC
TGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAA
TGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGAT
TTCATTTGGTGGTAGTTATTCAGGAGCATTXXXXXXXXXX

ILTLQALKKMNKSILLLVLVIVSIIGSIDSKKVFNVRTDLKNQLKFRHFDDSLDYDAINY
QWFTQSVDHFNPANPTTFQQRYLINDQYWDGTGPVFIMINGEGPMDINTVTQLQFVVWAK
QVSALVVSLEHRYYGASFVTEDLSLENLQWLNSAQALADNAVFRNFVAQQYNVPKESKWI
SFGGSYSGA---

Frame A:
nsditsiekneqinfiisfsncinywfn*lkesiqcsy*fkksiki*tf***frl*cnql
smvhskc*sf*sskpnnfptkifn**pilgwyrssfyhd*w*rsngy*ycnptsicclg*
ts*ctccfs*tsllwc*fcn*rpft*kftmvkfstsisr*csf*kfcstti*ctkrikmd
fiww*lfrs---


Frame B:
ILTLQALKKMNKSILLLVLVIVSIIGSIDSKKVFNVRTDLKNQLKFRHFDDSLDYDAINY
QWFTQSVDHFNPANPTTFQQRYLINDQYWDGTGPVFIMINGEGPMDINTVTQLQFVVWAK
QVSALVVSLEHRYYGASFVTEDLSLENLQWLNSAQALADNAVFRNFVAQQYNVPKESKWI
SFGGSYSGA---


Frame C:
f*hykh*kk*tnqfyy*f**lyqllvqltqrkysmfvli*kin*nldilmiv*immqsii
ngslkvliiliqqtqqlsnkdi*lmtnigmvqvqfls*lmvkvqwilil*pnfnllfgln
klvhllfllnivimvlvl*lktfhlkiyng*iqhkh*qimqfleil*hnnimyqknqngf
hlvvviqeh---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO856 (VFO856Q) /CSM/VF/VFO8-C/VFO856Q.Seq.d/                       1088   0.0
VFN637 (VFN637Q) /CSM/VF/VFN6-B/VFN637Q.Seq.d/                       1088   0.0
VFN438 (VFN438Q) /CSM/VF/VFN4-B/VFN438Q.Seq.d/                       1088   0.0
VFN372 (VFN372Q) /CSM/VF/VFN3-C/VFN372Q.Seq.d/                       1088   0.0
VFN304 (VFN304Q) /CSM/VF/VFN3-A/VFN304Q.Seq.d/                       1088   0.0
VFL395 (VFL395Q) /CSM/VF/VFL3-D/VFL395Q.Seq.d/                       1088   0.0
VFL258 (VFL258Q) /CSM/VF/VFL2-C/VFL258Q.Seq.d/                       1088   0.0
VFK871 (VFK871Q) /CSM/VF/VFK8-C/VFK871Q.Seq.d/                       1088   0.0
VFK862 (VFK862Q) /CSM/VF/VFK8-C/VFK862Q.Seq.d/                       1088   0.0
VFK613 (VFK613Q) /CSM/VF/VFK6-A/VFK613Q.Seq.d/                       1088   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI920191|BI920191.1 EST540126 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE24M6 5' end, mRNA sequence.    44   2e-05  2
CK265777|CK265777.1 EST711855 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC078 5' end, mRNA sequence.    44   3e-05  2
AC006909|AC006909.1 Caenorhabditis elegans clone Y82E9, WORKING DRAFT SEQUENCE, 25 unordered pieces.    36   0.006  9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    34   0.007  9
AP004597|AP004597.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 5/13.    38   0.018  6
BX248114|BX248114.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-209I22.    36   0.032  7
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   0.038  11
AC073027|AC073027.2 Homo sapiens chromosome 1 clone RP11-295E21 map 1, WORKING DRAFT SEQUENCE, 25 unordered pieces.    46   0.041  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.044  15
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    36   0.065  19

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...   125   1e-27
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...   125   1e-27
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...   123   4e-27
BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr...   119   6e-26
AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...   114   2e-24
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans                112   9e-24
L14331_6(L14331|pid:none) Caenorhabditis elegans cosmid K12H4, c...   112   9e-24
(P34528) RecName: Full=Putative serine protease K12H4.7;        ...   112   9e-24
FB848274_1(FB848274|pid:none) Sequence 67547 from Patent WO20080...   106   4e-22
T16490(T16490)hypothetical protein F56F10.1 - Caenorhabditis ele...   106   5e-22

 psg: 0.77  gvh: 0.72  alm: 0.20  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFD654 is cyt

>CFD654F.Seq
AATTCTGACATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAGTTTTAGT
AATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTACTGATTT
AAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAATCAATTA
TCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTTTCCAACA
AAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCATGATTAA
TGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAA
ACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAAC
TGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAA
TGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGAT
TTCATTTGGTGGTAGTTATTCAGGAGCATT----------