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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD649
Library CF
(Link to library)
Clone ID CFD649
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13716-1
Original site URL
Representative seq. ID CFD649P
(Link to Original site)
Representative DNA sequence 
>CFD649 (CFD649Q) /CSM/CF/CFD6-C/CFD649Q.Seq.d/
CTCTACGATAATCCACCAACTTGGGATGAAATCATTTCTTTCTTCCGTGGTAATGAACTT
CAATCCTATTTCACTAGAATTCTCGGTGTAGATTTAAAAGCACTCATCAAACCACAATAC
GTTGATAATCTTTCAAAGGCTGTCACTGGTGTAGTCTCAAGTATCCTCGATGCTAAATCT
GAAAAAGATAATAAACAAGAAATGATCGATTGTCTTGACTTAAAAGAAGCACTTCATAAA
ACTGTACCAGTACTTTCAGGTGGTGAATTACAACGTTTTGCAATTGCTGTTGTTGCAATT
CAAAAAGCCGATGTTTATATGTTTGATGAACCATCAAGTTATCTTGATGTTAAACAAAGA
TTAAAGGCAGCACAAGTTATTAGAGGTTTAATTCAATCACAAAATTATATTATTGTAGTT
GAACATGATCTTAGTGTTTTAGATTACTTATCAGATTTTATTTGTTGTCTTTATGGAGCA
CCAGGTGCTTATGGTGTTGTAACATTACCATTCTCTGTTAGAGAAGGTATTAATATTTTC
CTTAGTGGTCATATTCACACAGAGAATATGAGATTCCGTAAGGATGCATTAACCTTTAAA
TTCTCAXXXXXXXXXXTNTTATCGTCTCTNTAGTCATCACCNGATTCATTCTTCACGCTG
GTANATCTGGTTTCATCGTANAGCGCGNTTTCATTATGGCCACTTNNTTAGCTGATCGTG
TCATCGTTTATGCNTGGTATNCCAGGTGTCCTCATGTGTTGCTAANNCTCCACAATCTCN
CCTCACTGGTATGAACTCTTTCCCTTTNATCTCCCGNNATCACTTTACCGTCGTGATCCA
TCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LYDNPPTWDEIISFFRGNELQSYFTRILGVDLKALIKPQYVDNLSKAVTGVVSSILDAKS
EKDNKQEMIDCLDLKEALHKTVPVLSGGELQRFAIAVVAIQKADVYMFDEPSSYLDVKQR
LKAAQVIRGLIQSQNYIIVVEHDLSVLDYLSDFICCLYGAPGAYGVVTLPFSVREGINIF
LSGHIHTENMRFRKDALTFKFS---

---XIVSXVITXFILHAGXSGFIVXRXFIMATXLADRVIVYAWYXRCPHVLLXLHNLXSL
V*tlslxspxitlps*si
Translated Amino Acid sequence (All Frames) 
Frame A:
LYDNPPTWDEIISFFRGNELQSYFTRILGVDLKALIKPQYVDNLSKAVTGVVSSILDAKS
EKDNKQEMIDCLDLKEALHKTVPVLSGGELQRFAIAVVAIQKADVYMFDEPSSYLDVKQR
LKAAQVIRGLIQSQNYIIVVEHDLSVLDYLSDFICCLYGAPGAYGVVTLPFSVREGINIF
LSGHIHTENMRFRKDALTFKFS---

---xyrlxshhxihssrwxiwfhrxarfhyghxxs*schrlcxvxqvsscvaxxpqsxlt
gmnsfpxisrxhftvvihp

Frame B:
stiihqlgmksflssvvmnfnpislefsv*i*khssnhntliifqrlslv*sqvssmlnl
kkiinkk*sivlt*kkhfiklyqyfqvvnynvlqllllqfkkpmficlmnhqvilmlnkd
*rqhkllev*fnhkiill*lnmilvf*ityqilfvvfmehqvlmvl*hyhsllekvlifs
lvviftqri*dsvrmh*plns---

---XIVSXVITXFILHAGXSGFIVXRXFIMATXLADRVIVYAWYXRCPHVLLXLHNLXSL
V*tlslxspxitlps*si

Frame C:
lr*stnlg*nhfflpw**tsilfh*nsrcrfksthqttir**sfkgchwcslkyprc*i*
kr**trndrls*lkrsts*nctstfrw*ittfcnccccnsksrclyv**tikls*c*tki
kgstsy*rfnsitklyycs*t*s*cfrllirfyllslwstrclwccnitilc*rry*yfp
*wsyshreyeip*gcinl*il---

---lssl*sspdsfftlvxlvssxsaxslwplx*livssfmxgxpgvlmcc*xstisphw
yelfpfxlpxslyrrdps
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD649 (CFD649Q) /CSM/CF/CFD6-C/CFD649Q.Seq.d/                       1518   0.0
CFB396 (CFB396Q) /CSM/CF/CFB3-D/CFB396Q.Seq.d/                        841   0.0
SFE134 (SFE134Q) /CSM/SF/SFE1-B/SFE134Q.Seq.d/                        777   0.0
CFC385 (CFC385Q) /CSM/CF/CFC3-D/CFC385Q.Seq.d/                        761   0.0
VFE128 (VFE128Q) /CSM/VF/VFE1-B/VFE128Q.Seq.d/                        729   0.0
VFK139 (VFK139Q) /CSM/VF/VFK1-B/VFK139Q.Seq.d/                        720   0.0
SSA328 (SSA328Q) /CSM/SS/SSA3-B/SSA328Q.Seq.d/                        547   e-155
CFE323 (CFE323Q) /CSM/CF/CFE3-A/CFE323Q.Seq.d/                        420   e-116
VHN147 (VHN147Q) /CSM/VH/VHN1-B/VHN147Q.Seq.d/                        363   3e-99
VHI606 (VHI606Q) /CSM/VH/VHI6-A/VHI606Q.Seq.d/                        361   1e-98
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY077634|AY077634.1 Dictyostelium discoideum RNaseL inhibitor-like protein ABCE.1 gene, complete cds.   615   0.0    5
BQ866471|BQ866471.1 QGC8B04.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC8B04, mRNA sequence.    88   1e-29  2
BQ998861|BQ998861.1 QGG20H07.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG20H07, mRNA sequence.    88   1e-29  2
BF640015|BF640015.1 NF019F06IN1F1059 Insect herbivory Medicago truncatula cDNA clone NF019F06IN 5', mRNA sequence.    98   1e-24  2
BE204239|BE204239.1 EST396915 KV0 Medicago truncatula cDNA clone pKV0-14L24, mRNA sequence.    98   2e-24  2
BG368367|BG368367.1 HVSMEi0018A07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare cDNA clone HVSMEi0018A07f, mRNA sequence.    76   5e-18  2
BG299617|BG299617.1 HVSMEa0021B07f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare cDNA clone HVSMEa0021B07f, mRNA sequence.    76   5e-18  2
AJ470772|AJ470772.1 Hordeum vulgare EST clone S0000800151H09F1.    60   1e-17  3
BG440182|BG440182.1 GA__Ea0006E03f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0006E03f, mRNA sequence.    74   3e-17  2
BQ998110|BQ998110.1 QGG18F18.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG18F18, mRNA sequence.    88   1e-15  2
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY077634_1(AY077634|pid:none) Dictyostelium discoideum RNaseL in...   397   e-109
AC157490_5(AC157490|pid:none) Medicago truncatula clone mth2-123...   285   1e-75
AK226939_1(AK226939|pid:none) Arabidopsis thaliana mRNA for RNas...   283   4e-75
AP008217_1071(AP008217|pid:none) Oryza sativa (japonica cultivar...   281   2e-74
AM467716_1(AM467716|pid:none) Vitis vinifera contig VV78X234292....   279   7e-74
CP001334_147(CP001334|pid:none) Micromonas sp. RCC299 chromosome...   279   7e-74
CR954213_290(CR954213|pid:none) Ostreococcus tauri strain OTTH05...   277   3e-73
CP000593_269(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   277   3e-73
AE014296_1653(AE014296|pid:none) Drosophila melanogaster chromos...   274   3e-72
AJ720308_1(AJ720308|pid:none) Gallus gallus mRNA for hypothetica...   273   5e-72
protein update 2009. 5.13
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFD649 is cyt
5' end seq. ID CFD649F
5' end seq. 
>CFD649F.Seq
CTCTACGATAATCCACCAACTTGGGATGAAATCATTTCTTTCTTCCGTGGTAATGAACTT
CAATCCTATTTCACTAGAATTCTCGGTGTAGATTTAAAAGCACTCATCAAACCACAATAC
GTTGATAATCTTTCAAAGGCTGTCACTGGTGTAGTCTCAAGTATCCTCGATGCTAAATCT
GAAAAAGATAATAAACAAGAAATGATCGATTGTCTTGACTTAAAAGAAGCACTTCATAAA
ACTGTACCAGTACTTTCAGGTGGTGAATTACAACGTTTTGCAATTGCTGTTGTTGCAATT
CAAAAAGCCGATGTTTATATGTTTGATGAACCATCAAGTTATCTTGATGTTAAACAAAGA
TTAAAGGCAGCACAAGTTATTAGAGGTTTAATTCAATCACAAAATTATATTATTGTAGTT
GAACATGATCTTAGTGTTTTAGATTACTTATCAGATTTTATTTGTTGTCTTTATGGAGCA
CCAGGTGCTTATGGTGTTGTAACATTACCATTCTCTGTTAGAGAAGGTATTAATATTTTC
CTTAGTGGTCATATTCACACAGAGAATATGAGATTCCGTAAGGATGCATTAACCTTTAAA
TTCTCA----------
Length of 5' end seq. 606
3' end seq. ID CFD649Z
3' end seq. 
>CFD649Z.Seq
----------TNTTATCGTCTCTNTAGTCATCACCNGATTCATTCTTCACGCTGGTANAT
CTGGTTTCATCGTANAGCGCGNTTTCATTATGGCCACTTNNTTAGCTGATCGTGTCATCG
TTTATGCNTGGTATNCCAGGTGTCCTCATGTGTTGCTAANNCTCCACAATCTCNCCTCAC
TGGTATGAACTCTTTCCCTTTNATCTCCCGNNATCACTTTACCGTCGTGATCCATCCA
Length of 3' end seq. 228
Connected seq. ID CFD649P
Connected seq. 
>CFD649P.Seq
CTCTACGATAATCCACCAACTTGGGATGAAATCATTTCTTTCTTCCGTGGTAATGAACTT
CAATCCTATTTCACTAGAATTCTCGGTGTAGATTTAAAAGCACTCATCAAACCACAATAC
GTTGATAATCTTTCAAAGGCTGTCACTGGTGTAGTCTCAAGTATCCTCGATGCTAAATCT
GAAAAAGATAATAAACAAGAAATGATCGATTGTCTTGACTTAAAAGAAGCACTTCATAAA
ACTGTACCAGTACTTTCAGGTGGTGAATTACAACGTTTTGCAATTGCTGTTGTTGCAATT
CAAAAAGCCGATGTTTATATGTTTGATGAACCATCAAGTTATCTTGATGTTAAACAAAGA
TTAAAGGCAGCACAAGTTATTAGAGGTTTAATTCAATCACAAAATTATATTATTGTAGTT
GAACATGATCTTAGTGTTTTAGATTACTTATCAGATTTTATTTGTTGTCTTTATGGAGCA
CCAGGTGCTTATGGTGTTGTAACATTACCATTCTCTGTTAGAGAAGGTATTAATATTTTC
CTTAGTGGTCATATTCACACAGAGAATATGAGATTCCGTAAGGATGCATTAACCTTTAAA
TTCTCA----------TNTTATCGTCTCTNTAGTCATCACCNGATTCATTCTTCACGCTG
GTANATCTGGTTTCATCGTANAGCGCGNTTTCATTATGGCCACTTNNTTAGCTGATCGTG
TCATCGTTTATGCNTGGTATNCCAGGTGTCCTCATGTGTTGCTAANNCTCCACAATCTCN
CCTCACTGGTATGAACTCTTTCCCTTTNATCTCCCGNNATCACTTTACCGTCGTGATCCA
TCCA
Length of connected seq. 834
Full length Seq ID -
Full length Seq. -
Length of full length seq. -