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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD641
Library CF
(Link to library)
Clone ID CFD641
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFD641P
(Link to Original site)
Representative DNA sequence 
>CFD641 (CFD641Q) /CSM/CF/CFD6-B/CFD641Q.Seq.d/
ATTATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTG
GTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAA
TTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAG
AACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTAT
TTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGA
AACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAAT
TCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAA
TGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTC
CAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAAT
TAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGXXXXXXXXX
XAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACTNCNCTATCAAATAGATTTNCTTAAAAAATANTAAGTTAGNAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yc*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTE
RLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEF
KGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKL
NVQRIINEPTAAAIAY---

---QQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTA
EKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfs
eenxxik*ixlknxklx
Translated Amino Acid sequence (All Frames) 
Frame A:
iivkirvnik*lnikkchqlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlliq
nv*lvmlqriklq*iqpiqylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifkln
skvklkfshqkkslqwys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqfqn
*mfnvllmnqllllllm---

---nnkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikp
qkrmnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgif
qrktxlsnrfx*kixs*x

Frame B:
lllk*e*ilnn*ilknvinwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*yr
tfnw*cckesscnesnqysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*i
qr*n*sfltrrnlfngtlknernr*slsw*nh**ccnyrsslfq**stssnqrcwynfki
kcstyy**tncccycl---

---ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnr
rkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteff
rgklxyqidxlkkx*vx

Frame C:
yc*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTE
RLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEF
KGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKL
NVQRIINEPTAAAIAY---

---QQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTA
EKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfs
eenxxik*ixlknxklx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                       1074   0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                       1074   0.0
VHP786 (VHP786Q) /CSM/VH/VHP7-D/VHP786Q.Seq.d/                       1074   0.0
VHP783 (VHP783Q) /CSM/VH/VHP7-D/VHP783Q.Seq.d/                       1074   0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/                       1074   0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/                       1074   0.0
VHP627 (VHP627Q) /CSM/VH/VHP6-B/VHP627Q.Seq.d/                       1074   0.0
VHP558 (VHP558Q) /CSM/VH/VHP5-C/VHP558Q.Seq.d/                       1074   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1074   0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/                       1074   0.0
own update 2004. 7.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1053   0.0    2
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   894   0.0    3
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   281   e-142  3
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   281   e-141  6
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.   145   2e-82  8
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 123   7e-77  7
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70.   123   2e-76  7
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          123   3e-76  7
CF672516|CF672516.1 RTCNT1_64_D07.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_64_D07_A029 3', mRNA sequence.   194   6e-76  5
S78163|S78163.1 70 kda heat shock protein [Candida albicans, mRNA, 732 nt].   123   8e-72  6
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   356   8e-97
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   354   3e-96
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   334   2e-90
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   334   2e-90
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           316   7e-85
U71151_1(U71151|pid:none) Pneumocystis carinii heat shock protei...   311   2e-83
U80967_1(U80967|pid:none) Pneumocystis carinii f. sp. carinii he...   311   2e-83
AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he...   311   2e-83
(P11145) RecName: Full=Heat shock 70 kDa protein 4; AltName: Ful...   310   6e-83
EF442767_1(EF442767|pid:none) Trypanosoma rangeli isolate H14 cl...   309   1e-82
protein update 2009. 5.13
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFD641 is cyt
5' end seq. ID CFD641F
5' end seq. 
>CFD641F.Seq
ATTATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTG
GTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAA
TTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAG
AACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTAT
TTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGA
AACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAAT
TCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAA
TGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTC
CAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAAT
TAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATG---------
-
Length of 5' end seq. 591
3' end seq. ID CFD641Z
3' end seq. 
>CFD641Z.Seq
----------AACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCA
TTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGAT
AAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACC
GCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATC
ATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATG
TCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTT
TCAGAGGAAAACTNCNCTATCAAATAGATTTNCTTAAAAAATANTAAGTTAGNAA
Length of 3' end seq. 405
Connected seq. ID CFD641P
Connected seq. 
>CFD641P.Seq
ATTATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTG
GTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAA
TTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAG
AACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTAT
TTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGA
AACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAAT
TCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAA
TGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTC
CAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAAT
TAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATG---------
-AACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACTNCNCTATCAAATAGATTTNCTTAAAAAATANTAAGTTAGNAA
Length of connected seq. 996
Full length Seq ID -
Full length Seq. -
Length of full length seq. -