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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD632
Library CF
(Link to library)
Clone ID CFD632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15640-1
Original site URL
Representative seq. ID CFD632F
(Link to Original site)
Representative DNA sequence 
>CFD632 (CFD632Q) /CSM/CF/CFD6-B/CFD632Q.Seq.d/
AAAAGTTTTATTACACTTATTTATAAATTTATTTATTCATTTTTATTTATTTTATTTATA
CTTTTATAATAATGGATAAACAAGATGAAGATATTATAATGGAGGAAGAGGAGGAAGATG
AAGAAGTAGAGGAGGAAGAAGAAGAGCAAGAAGAAGAGGAGGAAGAAGAAGAGGAGAAAG
AAGAAATGGTTGAAGATGAAGAAATAGAGGAGCCTGAAGAAGAGGAAGAGGAAGAAGAAG
AAAAAGTTGTAGAGGAAGAAGAGGAGGAAGAAGAGGATGAGGAAGAGGAAGAAGAAAAAG
TAGAGACTGAAGAACTTGAGGAAGAAATGGAAGAGGATAAAGAGGAAGAAGAAACTGAAG
AGAAAGATGAAGAAGAGCAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAGG
AAGAAGAAGAGGAAGAAGAGGAAGAAGATGAAGAGATTGAAGTAGAGAAACCAATTGAAA
CCAAACCAAAAAAGATAAAAAGAAAGATACCCGCAAAGAAAAATACCACCACCACAACCA
CCACAACCACCAACCCAAAAAGATAAAGAAAAAGAAAAAGAAGAAAAGTTTAAAAATGAA
GATXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kfyytyl*IYLFIFIYFIYTFIIMDKQDEDIIMEEEEEDEEVEEEEEEQEEEEEEEEEKE
EMVEDEEIEEPEEEEEEEEEKVVEEEEEEEEDEEEEEEKVETEELEEEMEEDKEEEETEE
KDEEEQEEEEEEEEEEEEEEEEEEEEEEDEEIEVEKPIETKPKKIKRKIPAKKNTTTTTT
TTTNPKR*rkrkrrkv*k*r---
Translated Amino Acid sequence (All Frames) 
Frame A:
ksfitliykfiysflfilfill**winkmkil*wrkrrkmkk*rrkkkskkkrrkkkrrk
kkwlkmkk*rslkkrkrkkkkkl*rkkrrkkrmrkrkkkk*rlknlrkkwkrikrkkklk
rkmkkskkkkrkrkrkrkkrkkkrkkrkkmkrlk*rnqlkpnqkr*kerypqrkipppqp
pqpptqkdkekekeekfkne---


Frame B:
kvllhlfinlfihfylfylyfynng*tr*ryynggrggr*rsrggrrrarrrggrrrger
rng*r*rnrga*rrgrgrrrkscrgrrggrrg*grgrrksrd*rt*grngrg*rgrrn*r
er*rrarrrrgrgrgrgrrgrrrgrrgrr*rd*sretn*nqtkkdkkkdtrkekyhhhnh
hnhqpkkikkkkkkkslkmk---


Frame C:
kfyytyl*IYLFIFIYFIYTFIIMDKQDEDIIMEEEEEDEEVEEEEEEQEEEEEEEEEKE
EMVEDEEIEEPEEEEEEEEEKVVEEEEEEEEDEEEEEEKVETEELEEEMEEDKEEEETEE
KDEEEQEEEEEEEEEEEEEEEEEEEEEEDEEIEVEKPIETKPKKIKRKIPAKKNTTTTTT
TTTNPKR*rkrkrrkv*k*r---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL431 (SSL431Q) /CSM/SS/SSL4-B/SSL431Q.Seq.d/                         66   7e-10
CFH442 (CFH442Q) /CSM/CF/CFH4-B/CFH442Q.Seq.d/                         66   7e-10
CFD632 (CFD632Q) /CSM/CF/CFD6-B/CFD632Q.Seq.d/                         66   7e-10
AFL878 (AFL878Q) /CSM/AF/AFL8-D/AFL878Q.Seq.d/                         66   7e-10
AFK406 (AFK406Q) /CSM/AF/AFK4-A/AFK406Q.Seq.d/                         66   7e-10
VHG856 (VHG856Q) /CSM/VH/VHG8-C/VHG856Q.Seq.d/                         36   0.60
VHE819 (VHE819Q) /CSM/VH/VHE8-A/VHE819Q.Seq.d/                         36   0.60
VHE503 (VHE503Q) /CSM/VH/VHE5-A/VHE503Q.Seq.d/                         36   0.60
VHD604 (VHD604Q) /CSM/VH/VHD6-A/VHD604Q.Seq.d/                         36   0.60
VFK194 (VFK194Q) /CSM/VF/VFK1-D/VFK194Q.Seq.d/                         36   0.60
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    66   6e-07  1
dna update 2003. 9.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 61,144,025
protein update 2009. 5.13
PSORT 

 psg: 0.99  gvh: 0.27  alm: 0.27  top: -0.13  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFD632 is cyt
5' end seq. ID CFD632F
5' end seq. 
>CFD632F.Seq
AAAAGTTTTATTACACTTATTTATAAATTTATTTATTCATTTTTATTTATTTTATTTATA
CTTTTATAATAATGGATAAACAAGATGAAGATATTATAATGGAGGAAGAGGAGGAAGATG
AAGAAGTAGAGGAGGAAGAAGAAGAGCAAGAAGAAGAGGAGGAAGAAGAAGAGGAGAAAG
AAGAAATGGTTGAAGATGAAGAAATAGAGGAGCCTGAAGAAGAGGAAGAGGAAGAAGAAG
AAAAAGTTGTAGAGGAAGAAGAGGAGGAAGAAGAGGATGAGGAAGAGGAAGAAGAAAAAG
TAGAGACTGAAGAACTTGAGGAAGAAATGGAAGAGGATAAAGAGGAAGAAGAAACTGAAG
AGAAAGATGAAGAAGAGCAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAGG
AAGAAGAAGAGGAAGAAGAGGAAGAAGATGAAGAGATTGAAGTAGAGAAACCAATTGAAA
CCAAACCAAAAAAGATAAAAAGAAAGATACCCGCAAAGAAAAATACCACCACCACAACCA
CCACAACCACCAACCCAAAAAGATAAAGAAAAAGAAAAAGAAGAAAAGTTTAAAAATGAA
GAT----------
Length of 5' end seq. 603
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -