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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD623
Library CF
(Link to library)
Clone ID CFD623
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID CFD623P
(Link to Original site)
Representative DNA sequence 
>CFD623 (CFD623Q) /CSM/CF/CFD6-A/CFD623Q.Seq.d/
ATATTTTTTTTTATTAGTTAATAATAGTTAAAATCTTTTTTTTTATTGTTTTAAATATTT
TTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTA
AAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTG
CAGCATACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAA
GAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAA
GAANAAGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAG
CTGGTCAAAAGATTTGCCCACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTG
GTACCGTTAGTTTCTACCTTTNTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTC
AAGATGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTACAXXXXXXX
XXXAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTTCCAATATATT
ATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAG
AAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGT
GCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTA
GGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATT
CCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGATGGTGATTCA
TACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAATGAATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iffy*LIIVKIFFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCA
AYPRNYRFYEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRXSSSITNLYSSKHPMGNFQA
GQKICPQWPARNHATALRAGTVSFYLXPKMTSDAPADPSQDVFFQNSIHSSPFGNCT---

---RKAAAEESRKHKSTIFQYIMRDGKLEREFSSASWGPYSKKEVEYYETRPILGNVLFF
KCATGSNCLSSKGKRTLNINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDG
DSYNTISVPLQRFYRNE
Translated Amino Acid sequence (All Frames) 
Frame A:
ifffis***lksffllf*ifflk*kk*yyf*qyylyyylvklnhihl*nvwigilvqihv
qhtqetidfmnnkamvsyskevnsqnhtqlnwvnhvaqhkexvlqlpifivqniqweisk
lvkrfahngqqetmrlh*elvplvstfxqk*hqmlpqiqvkmysskiqsiqahletv---

---RKAAAEESRKHKSTIFQYIMRDGKLEREFSSASWGPYSKKEVEYYETRPILGNVLFF
KCATGSNCLSSKGKRTLNINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDG
DSYNTISVPLQRFYRNE

Frame B:
yffllvnns*nlffycfkyff*neknniifnsttciiiw*n*itfiyemcglgfwfkfmc
sipkkl*il*ttrrwflipkr*ihktipn*igsimwpstkxkffnyqsl*fktsngkfps
wskdlptmaskkpcdcikswyr*flpxskndircsrrsksrcilpkfnpfkpiwkly---

---eklqqkspeninqpfsnil*emvnwkensqvqvgvhiqrrrlnimkldqylemfysl
nvqldpivyqvkakepststf*vlkksfqilklts*pkvkkfhsqfh*nhtlihhllmmv
ihtiqlafhfkdsiemn

Frame C:
iffy*LIIVKIFFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCA
AYPRNYRFYEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRXSSSITNLYSSKHPMGNFQA
GQKICPQWPARNHATALRAGTVSFYLXPKMTSDAPADPSQDVFFQNSIHSSPFGNCT---

---kscsrrvqkt*inhfpiyyerw*igkrilkcklgsifkegg*il*n*tntwkcfil*
mcnwiqlfik*rqknpqhqhfrf*rnhfkyss*plnqr*knstlnfirtih*fiiy**w*
fiqyn*rstskil*k*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK281 (SFK281Q) /CSM/SF/SFK2-D/SFK281Q.Seq.d/                        890   0.0
SFI679 (SFI679Q) /CSM/SF/SFI6-D/SFI679Q.Seq.d/                        890   0.0
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                        890   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                        890   0.0
SFE718 (SFE718Q) /CSM/SF/SFE7-A/SFE718Q.Seq.d/                        890   0.0
SFE191 (SFE191Q) /CSM/SF/SFE1-D/SFE191Q.Seq.d/                        890   0.0
SFD893 (SFD893Q) /CSM/SF/SFD8-D/SFD893Q.Seq.d/                        890   0.0
SFD654 (SFD654Q) /CSM/SF/SFD6-C/SFD654Q.Seq.d/                        890   0.0
SFB653 (SFB653Q) /CSM/SF/SFB6-C/SFB653Q.Seq.d/                        890   0.0
SFB634 (SFB634Q) /CSM/SF/SFB6-B/SFB634Q.Seq.d/                        890   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC106527|AC106527.4 Rattus norvegicus clone CH230-26E17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   0.009  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.027  15
AC006529|AC006529.1 Homo sapiens clone SCb-20L24 from 7q31, complete sequence.    50   0.058  1
AC116940|AC116940.2 Pan troglodytes clone RP43-166L2, WORKING DRAFT SEQUENCE.    50   0.058  1
AC135836|AC135836.2 Papio anubis clone RP41-251K4, WORKING DRAFT SEQUENCE, 4 ordered pieces.    50   0.058  1
AC116436|AC116436.2 Pan troglodytes clone RP43-55P4, WORKING DRAFT SEQUENCE, 4 ordered pieces.    50   0.058  1
AC063932|AC063932.14 Homo sapiens 3 BAC RP11-298A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.084  10
AC131557|AC131557.4 Rattus norvegicus clone CH230-8O19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   0.093  9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.12   11
BQ056992|BQ056992.1 AGENCOURT_6769370 NIH_MGC_99 Homo sapiens cDNA clone IMAGE:5812136 5', mRNA sequence.    48   0.23   1
dna update 2004. 1.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 1,547,570,771
protein update 2009. 5.13
PSORT 

 psg: 0.94  gvh: 0.72  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for CFD623 is exc
5' end seq. ID CFD623F
5' end seq. 
>CFD623F.Seq
ATATTTTTTTTTATTAGTTAATAATAGTTAAAATCTTTTTTTTTATTGTTTTAAATATTT
TTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTA
AAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTG
CAGCATACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAA
GAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAA
GAANAAGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAG
CTGGTCAAAAGATTTGCCCACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTG
GTACCGTTAGTTTCTACCTTTNTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTC
AAGATGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTACA-------
---
Length of 5' end seq. 533
3' end seq. ID CFD623Z
3' end seq. 
>CFD623Z.Seq
----------AGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTTCCA
ATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCCATA
TTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATTCTT
TAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACCCTCAACATCAA
CATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGGTGA
AAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGATGG
TGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAATGAATT
Length of 3' end seq. 404
Connected seq. ID CFD623P
Connected seq. 
>CFD623P.Seq
ATATTTTTTTTTATTAGTTAATAATAGTTAAAATCTTTTTTTTTATTGTTTTAAATATTT
TTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTA
AAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTG
CAGCATACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAA
GAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAA
GAANAAGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAG
CTGGTCAAAAGATTTGCCCACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTG
GTACCGTTAGTTTCTACCTTTNTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTC
AAGATGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTACA-------
---AGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTTCCAATATATT
ATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAG
AAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGT
GCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTA
GGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATT
CCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGATGGTGATTCA
TACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAATGAATT
Length of connected seq. 937
Full length Seq ID -
Full length Seq. -
Length of full length seq. -