>CFD619 (CFD619Q) /CSM/CF/CFD6-A/CFD619Q.Seq.d/
AGCTAATATTACAACAACGCAAATATATAAAAATAAAGATGGAAAGTGGTCCAGTCGTCA
TTGATGTTTCTAGATTTCTTGCTGATCCAACCAGTGCTGAAGCATTGGAAGATTGTAAAA
AATTAGTTAAAACTTTACAAGAAACATCTTGTTTAGTTATTAAACATCCAAAAGTCAATG
AGGAAGATAATTCAAGATTTTTAGATATGATGGAAAAATATTATGAACAACCAACTGAGG
AATTAATGAAAGATGTTCATCCAGAATGGAGTTATCAATTAGGAGCCACACCAGAATTTA
CAGAGGAACCAAGAGATCATAGTGAAGTTATCACTAAATTATTACCACAATATGCAGCAC
ATGCACCAAAAGGAGCCGATCCAAAATGGAGATTCTTTTGGAGAATTGGTGATCGTCCAG
AGGATACTAAATTTCCAGAATTAAATTGTGCCCCAGTCATTCCAAAAGCATTCCCGGAAT
GGCAAAATGTTATGGACTCATGGGGTTCATTAATGTTGTCATCAATTGAGACCGTCTCTG
AGATGATTGCCACTGGTTATAATTTACCAAAGGATTCAATCACCAACTTGATGAAGAACG
GCCCACATTTATTAGCACCAACCGGTTCTGATTTAAAGAGATTTGGTAATTTGGATCAAA
TTTTCGCAGGTTTCCACTACGATTTCAATTTAXXXXXXXXXX

LILQQRKYIKIKMESGPVVIDVSRFLADPTSAEALEDCKKLVKTLQETSCLVIKHPKVNE
EDNSRFLDMMEKYYEQPTEELMKDVHPEWSYQLGATPEFTEEPRDHSEVITKLLPQYAAH
APKGADPKWRFFWRIGDRPEDTKFPELNCAPVIPKAFPEWQNVMDSWGSLMLSSIETVSE
MIATGYNLPKDSITNLMKNGPHLLAPTGSDLKRFGNLDQIFAGFHYDFN---

Frame A:
s*yynnani*k*rwkvvqsslmfldflliqpvlkhwkivkn*lklykkhlv*llniqksm
rkiiqdf*i*wknimnnqlrn**kmfiqngvin*ephqnlqrnqeiivklslnyyhnmqh
mhqkepiqngdsfgelvivqrilnfqn*ivpqsfqkhsrngkmlwthgvh*cchqlrpsl
r*lplviiyqriqspt**rtahiy*hqpvli*rdlviwikfsqvsttisi---


Frame B:
anitttqiyknkdgkwssrh*cf*isc*snqc*sigrl*kis*nftrnilfsy*tsksq*
gr*fkifrydgkil*ttn*ginercssrmelsirshtriyrgtkrs**syh*iitticst
ctkrsrskmeillenw*ssrgy*isriklcpshsksipgmakcyglmgfinvvin*drl*
ddchwl*ftkgfnhqldeerptfistnrf*fkeiw*fgsnfrrfplrfqf---


Frame C:
LILQQRKYIKIKMESGPVVIDVSRFLADPTSAEALEDCKKLVKTLQETSCLVIKHPKVNE
EDNSRFLDMMEKYYEQPTEELMKDVHPEWSYQLGATPEFTEEPRDHSEVITKLLPQYAAH
APKGADPKWRFFWRIGDRPEDTKFPELNCAPVIPKAFPEWQNVMDSWGSLMLSSIETVSE
MIATGYNLPKDSITNLMKNGPHLLAPTGSDLKRFGNLDQIFAGFHYDFN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD756 (VFD756Q) /CSM/VF/VFD7-C/VFD756Q.Seq.d/                       1372   0.0
VFB639 (VFB639Q) /CSM/VF/VFB6-B/VFB639Q.Seq.d/                       1372   0.0
CFD619 (CFD619Q) /CSM/CF/CFD6-A/CFD619Q.Seq.d/                       1372   0.0
VFI249 (VFI249Q) /CSM/VF/VFI2-C/VFI249Q.Seq.d/                       1328   0.0
SFK173 (SFK173Q) /CSM/SF/SFK1-D/SFK173Q.Seq.d/                       1261   0.0
VFL846 (VFL846Q) /CSM/VF/VFL8-B/VFL846Q.Seq.d/                       1217   0.0
VFB619 (VFB619Q) /CSM/VF/VFB6-A/VFB619Q.Seq.d/                       1189   0.0
VFC644 (VFC644Q) /CSM/VF/VFC6-B/VFC644Q.Seq.d/                       1183   0.0
VFO776 (VFO776Q) /CSM/VF/VFO7-D/VFO776Q.Seq.d/                       1102   0.0
VFD150 (VFD150Q) /CSM/VF/VFD1-C/VFD150Q.Seq.d/                       1055   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.016  10
AP002782|AP002782.3 Homo sapiens genomic DNA, chromosome 11q clone:RP11-660M18, complete sequences.    32   0.028  9
X94355|X94355.2 Cowpox virus strain GRI-90, complete genome.       38   0.032  8
AI356322|AI356322.1 qz20h01.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone IMAGE:2027473 3' similar to gb:K00558 TUBULIN ALPHA-1 CHAIN (HUMAN);, mRNA sequence.    50   0.042  1
AC127021|AC127021.18 Medicago truncatula clone mth2-5e5, WORKING DRAFT SEQUENCE.    50   0.042  1
AF380138|AF380138.1 Monkeypox virus strain Zaire-96-I-16, complete genome.    38   0.043  7
AL606448|AL606448.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22.    36   0.10   7
AX926711|AX926711.1 Sequence 1 from Patent WO03084989.             44   0.16   9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.16   10
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.29   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM424957_3(AM424957|pid:none) Vitis vinifera contig VV78X140396....   223   3e-57
AB017064_7(AB017064|pid:none) Arabidopsis thaliana genomic DNA, ...   223   3e-57
EF145976_1(EF145976|pid:none) Populus trichocarpa clone WS0114_K...   215   9e-55
AK067050_1(AK067050|pid:none) Oryza sativa Japonica Group cDNA c...   206   5e-52
BT064205_1(BT064205|pid:none) Zea mays full-length cDNA clone ZM...   206   7e-52
EF408659_1(EF408659|pid:none) Silene latifolia unknown protein (...   197   3e-49
DQ056143_2(DQ056143|pid:none) Coprinellus disseminatus strain C3...   154   2e-36
EU561055_1(EU561055|pid:none) Silene noctiflora isolate Snoc7 X7...   146   7e-34
EU561063_1(EU561063|pid:none) Silene conica isolate Scon7 X7 mRN...   145   9e-34
EU561058_1(EU561058|pid:none) Silene latifolia isolate SlX7 X7 m...   145   1e-33

 psg: 0.69  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFD619 is cyt

>CFD619F.Seq
AGCTAATATTACAACAACGCAAATATATAAAAATAAAGATGGAAAGTGGTCCAGTCGTCA
TTGATGTTTCTAGATTTCTTGCTGATCCAACCAGTGCTGAAGCATTGGAAGATTGTAAAA
AATTAGTTAAAACTTTACAAGAAACATCTTGTTTAGTTATTAAACATCCAAAAGTCAATG
AGGAAGATAATTCAAGATTTTTAGATATGATGGAAAAATATTATGAACAACCAACTGAGG
AATTAATGAAAGATGTTCATCCAGAATGGAGTTATCAATTAGGAGCCACACCAGAATTTA
CAGAGGAACCAAGAGATCATAGTGAAGTTATCACTAAATTATTACCACAATATGCAGCAC
ATGCACCAAAAGGAGCCGATCCAAAATGGAGATTCTTTTGGAGAATTGGTGATCGTCCAG
AGGATACTAAATTTCCAGAATTAAATTGTGCCCCAGTCATTCCAAAAGCATTCCCGGAAT
GGCAAAATGTTATGGACTCATGGGGTTCATTAATGTTGTCATCAATTGAGACCGTCTCTG
AGATGATTGCCACTGGTTATAATTTACCAAAGGATTCAATCACCAACTTGATGAAGAACG
GCCCACATTTATTAGCACCAACCGGTTCTGATTTAAAGAGATTTGGTAATTTGGATCAAA
TTTTCGCAGGTTTCCACTACGATTTCAATTTA----------