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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD603
Library CF
(Link to library)
Clone ID CFD603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID CFD603P
(Link to Original site)
Representative DNA sequence 
>CFD603 (CFD603Q) /CSM/CF/CFD6-A/CFD603Q.Seq.d/
GTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTT
ACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAA
GTTCTTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATA
CTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCT
CACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACTA
CTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGTTAGAGGTT
CCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGTGCCAATGTTGATTGTGGTTCAG
GTTACCATTGTAAGAATGGTGAATGTATTCGTGATAAAGTAGAATGCGATGCATGTGATC
AAATTAACTGCCCAAAGGGTCATCATTGTATATCTCAACCXXXXXXXXXXCNTTAGTGAT
AACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTNCAATGGTAATGATGAATTT
GAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTAT
TAAATTAANCTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
QGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHT
TTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGPTCGNVNCPRGYHCEVRGS
QAVCVADEFDSCANVDCGSGYHCKNGECIRDKVECDACDQINCPKGHHCISQ---

---LVITTVMLMKKILMKIXMVMMNLKLMLKVISKKMISKKNMHFIKLXFFS*knnnnnl
itnhy
Translated Amino Acid sequence (All Frames) 
Frame A:
vkahqvvhqvlviklivqmvtfvq**in*qyvflhhplrqvlhqplahilplvvqplahi
lllvvqplahilllvvqplahilllvvqplahilllvvqllvqhvvmltaqevtivklev
pklfvlpmnlthvpmlivvqvtivrmvnvfvik*namhvikltaqrviivyln---

---x***lplc**rry**rxqw***i*n*c*r*fprr*frrricilln*xffhkkiiiii
**lii

Frame B:
srhirwytrfl**s*lskwlhlynsksissmcfsiilfvkffinhwltyyhwwfnhwlty
yywwfnhwltyyywwfnhwltyyywwfnhwltyyywwfnywsnmw*c*lpkrlpl*s*rf
psclccr*i*lmcqc*lwfrlpl*ew*mys**srmrcm*sn*lpkgsslyist---

---xsdnyryvdeedidedxngndefeidvegdfqeddfeeeyafy*ixlffikk****f
nn*sl

Frame C:
QGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHT
TTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGPTCGNVNCPRGYHCEVRGS
QAVCVADEFDSCANVDCGSGYHCKNGECIRDKVECDACDQINCPKGHHCISQ---

---LVITTVMLMKKILMKIXMVMMNLKLMLKVISKKMISKKNMHFIKLXFFS*knnnnnl
itnhy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD603 (CFD603Q) /CSM/CF/CFD6-A/CFD603Q.Seq.d/                       1253   0.0
CFF146 (CFF146Q) /CSM/CF/CFF1-B/CFF146Q.Seq.d/                       1013   0.0
SFK627 (SFK627Q) /CSM/SF/SFK6-B/SFK627Q.Seq.d/                        975   0.0
SFJ181 (SFJ181Q) /CSM/SF/SFJ1-D/SFJ181Q.Seq.d/                        955   0.0
SFD365 (SFD365Q) /CSM/SF/SFD3-C/SFD365Q.Seq.d/                        916   0.0
AFB666 (AFB666Q) /CSM/AF/AFB6-C/AFB666Q.Seq.d/                        900   0.0
CFD115 (CFD115Q) /CSM/CF/CFD1-A/CFD115Q.Seq.d/                        878   0.0
CFC855 (CFC855Q) /CSM/CF/CFC8-C/CFC855Q.Seq.d/                        827   0.0
CHA679 (CHA679Q) /CSM/CH/CHA6-D/CHA679Q.Seq.d/                        825   0.0
CFJ816 (CFJ816Q) /CSM/CF/CFJ8-A/CFJ816Q.Seq.d/                        825   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.  1015   0.0    9
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   987   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   3e-06  8
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.    34   4e-06  3
AC136724|AC136724.4 Mus musculus clone RP23-65F24, WORKING DRAFT SEQUENCE, 13 unordered pieces.    28   7e-06  4
BX901952|BX901952.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-117P18.    30   2e-05  13
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    34   0.002  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           44   0.003  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   0.004  6
AC099694|AC099694.12 Mus musculus, clone RP23-195D9, complete sequence.    48   0.009  6
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   171   2e-41
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    65   2e-09
CP001574_180(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    60   5e-08
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    59   1e-07
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    59   1e-07
Z81540_13(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    58   2e-07
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    58   2e-07
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    58   2e-07
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    57   7e-07
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    57   7e-07
protein update 2009. 5.13
PSORT 

 psg: 0.83  gvh: 0.62  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.18
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFD603 is mit
5' end seq. ID CFD603F
5' end seq. 
>CFD603F.Seq
GTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTT
ACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAA
GTTCTTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATA
CTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCT
CACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACTA
CTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGTTAGAGGTT
CCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGTGCCAATGTTGATTGTGGTTCAG
GTTACCATTGTAAGAATGGTGAATGTATTCGTGATAAAGTAGAATGCGATGCATGTGATC
AAATTAACTGCCCAAAGGGTCATCATTGTATATCTCAACC----------
Length of 5' end seq. 520
3' end seq. ID CFD603Z
3' end seq. 
>CFD603Z.Seq
----------CNTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATT
NCAATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCG
AAGAAGAATATGCATTTTATTAAATTAANCTTTTTTTCATAAAAAAATAATAATAATAAT
TTAATAACTAATCATTAT
Length of 3' end seq. 188
Connected seq. ID CFD603P
Connected seq. 
>CFD603P.Seq
GTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTT
ACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAA
GTTCTTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATA
CTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCT
CACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACTA
CTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGTTAGAGGTT
CCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGTGCCAATGTTGATTGTGGTTCAG
GTTACCATTGTAAGAATGGTGAATGTATTCGTGATAAAGTAGAATGCGATGCATGTGATC
AAATTAACTGCCCAAAGGGTCATCATTGTATATCTCAACC----------CNTTAGTGAT
AACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTNCAATGGTAATGATGAATTT
GAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTAT
TAAATTAANCTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTAT
Length of connected seq. 708
Full length Seq ID -
Full length Seq. -
Length of full length seq. -