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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD596
Library CF
(Link to library)
Clone ID CFD596
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14178-1
Original site URL
Representative seq. ID CFD596F
(Link to Original site)
Representative DNA sequence 
>CFD596 (CFD596Q) /CSM/CF/CFD5-D/CFD596Q.Seq.d/
ATTAAATNATTTTTTGAAAATAGAAAAACAACAACTAAAAACATTAAAATGACATTATTA
AAAACAATCTCTAATCTTGGTACCAATAATTCTTTGAAGGCCCAATCAAATATACAAATG
CAACCAAATGAGCTTTTATTAAATAATAAAAACTCCTTTGGCCAGAATGAAACAAAGAAT
TTTGATGTAAATGGATTTTTAGCTACTATGGGCCAAGCTATTGAGATTGCCAGTTTTGCT
GCACGTTTTTTTCTTTAGCTATTTTGTATGTGATAAATGGCCATTGGTGATGGTGCCAAA
ATCAATCCTCATCAACTCATAAAAACAAATCTAATTTGGGTGGGATAAAGTAAAGAGAAA
AAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IKXFFENRKTTTKNIKMTLLKTISNLGTNNSLKAQSNIQMQPNELLLNNKNSFGQNETKN
FDVNGFLATMGQAIEIASFAARFFL*lfcm**maigdgakinphqliktnliwvg*skek
kk---
Translated Amino Acid sequence (All Frames) 
Frame A:
IKXFFENRKTTTKNIKMTLLKTISNLGTNNSLKAQSNIQMQPNELLLNNKNSFGQNETKN
FDVNGFLATMGQAIEIASFAARFFL*lfcm**maigdgakinphqliktnliwvg*skek
kk---


Frame B:
lnxflkiekqqlktlk*hy*kqslilvpiil*rpnqiykcnqmsfy*iiktplarmkqri
lm*mdf*llwakllrlpvllhvfffsyfvcdkwplvmvpksilins*kqi*fgwdkvkrk
k---


Frame C:
*xif*k*knnn*kh*ndiiknnl*swyq*ffegpikytnatk*afik**kllwpe*nkef
*ckwifsyygpsy*dcqfcctffslailyvinghw*wcqnqsssthknksnlggik*rek
k---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK310 (SSK310Q) /CSM/SS/SSK3-A/SSK310Q.Seq.d/                        539   e-152
SSH180 (SSH180Q) /CSM/SS/SSH1-D/SSH180Q.Seq.d/                        539   e-152
SHA331 (SHA331Q) /CSM/SH/SHA3-B/SHA331Q.Seq.d/                        539   e-152
SFD720 (SFD720Q) /CSM/SF/SFD7-A/SFD720Q.Seq.d/                        539   e-152
SFB432 (SFB432Q) /CSM/SF/SFB4-B/SFB432Q.Seq.d/                        539   e-152
CHL689 (CHL689Q) /CSM/CH/CHL6-D/CHL689Q.Seq.d/                        539   e-152
CHB303 (CHB303Q) /CSM/CH/CHB3-A/CHB303Q.Seq.d/                        539   e-152
CFD596 (CFD596Q) /CSM/CF/CFD5-D/CFD596Q.Seq.d/                        539   e-152
CFB866 (CFB866Q) /CSM/CF/CFB8-C/CFB866Q.Seq.d/                        539   e-152
CHM290 (CHM290Q) /CSM/CH/CHM2-D/CHM290Q.Seq.d/                        525   e-148
own update 2002.11.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC123891|AC123891.5 Rattus norvegicus clone CH230-371D16, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.    40   0.054  3
AX458634|AX458634.1 Sequence 180 from Patent WO0246454.            38   0.056  2
AX346461|AX346461.1 Sequence 1532 from Patent WO0200928.           38   0.060  2
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    38   0.070  5
BX649522|BX649522.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.15   5
AF397475|AF397475.1 Ips calligraphus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    36   0.25   2
BX664714|BX664714.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   0.46   3
AL138753|AL138753.8 Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the  TYRP1 gene for tyrosinase-related protein 1 and part of a putative  novel gene.    38   0.47   3
AC140803|AC140803.4 Rattus norvegicus clone CH230-440J20, WORKING DRAFT SEQUENCE, 29 unordered pieces.    32   0.69   7
AC055708|AC055708.19 Homo sapiens chromosome 3 clone RP11-89B6, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.77   7
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.041
CR380956_361(CR380956|pid:none) Candida glabrata strain CBS138 c...    35   0.77
(P17119) RecName: Full=Kinesin-like protein KAR3; AltName: Full=...    33   2.3
AL844506_177(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    32   5.0
AE016877_1419(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    32   6.6
CP000249_2582(CP000249|pid:none) Frankia sp. CcI3, complete geno...    32   8.6
AL844505_44(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    32   8.6
protein update 2009. 5.13
PSORT 

 psg: 0.63  gvh: 0.31  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFD596 is mit
5' end seq. ID CFD596F
5' end seq. 
>CFD596F.Seq
ATTAAATNATTTTTTGAAAATAGAAAAACAACAACTAAAAACATTAAAATGACATTATTA
AAAACAATCTCTAATCTTGGTACCAATAATTCTTTGAAGGCCCAATCAAATATACAAATG
CAACCAAATGAGCTTTTATTAAATAATAAAAACTCCTTTGGCCAGAATGAAACAAAGAAT
TTTGATGTAAATGGATTTTTAGCTACTATGGGCCAAGCTATTGAGATTGCCAGTTTTGCT
GCACGTTTTTTTCTTTAGCTATTTTGTATGTGATAAATGGCCATTGGTGATGGTGCCAAA
ATCAATCCTCATCAACTCATAAAAACAAATCTAATTTGGGTGGGATAAAGTAAAGAGAAA
AAAAAAA----------
Length of 5' end seq. 367
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -