CFD588
Library CF
(Link to library)
Clone ID CFD588
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11056-1
Original site URL
Representative seq. ID CFD588F
(Link to Original site)
Representative DNA sequence
>CFD588 (CFD588Q) /CSM/CF/CFD5-D/CFD588Q.Seq.d/
ATATTATACTTCATATAAATAACTATCTCCAAATGAAATTTTTATTAAAAATTAATTTAT
TGATCTTTTTTTTTGTGAATTCCTGTAACTCACATCACTATGTTGGTATTATCGATGACA
ATTCTATAACTCCAAACATGCAATGGTTTAACGATATTATGTTCATTAGAAGAAACGCCA
ATGGTGCCTGGCCTAGAGTTAATTCTTTTAATTGAAACGGGGTATACTTTGTTTTCGGGA
ATATGGCTCCTCATGGATTGACCTTGCTGTATATAGGTAAAGCATCCCATCAAGATGGGA
TGGGTTTGTACCACAGAGGTTACTCAGATATAGTTGGTCGCCCAAGGTTTTGGGGGACTC
CAAATGCAAGACCACTAGAAATGGCAAATGCCCAAATTTTAATGTATTATAGAGGTTTTG
ATGGTCCAGTTGCTGGTCATGCTGAGTGGTTCCTTTCAGTATTTGGGTGCCCAGAAAATA
GTTTCAACGAGGGTGGTTTAAAGGAATCTCAATTTTGTTATGGTGCAGGTCAATGGAATT
TTTTCCATGCAACTGCTCCCGCAGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
iilhinnylqmkfllkinllifffvnscnshhyvgiiddnsitpnmqwfndimfirrnan
gawprvnsfn*NGVYFVFGNMAPHGLTLLYIGKASHQDGMGLYHRGYSDIVGRPRFWGTP
NARPLEMANAQILMYYRGFDGPVAGHAEWFLSVFGCPENSFNEGGLKESQFCYGAGQWNF
FHATAPA---


Translated Amino Acid sequence (All Frames)
Frame A:
ilyfi*itisk*nfy*kliy*sffl*ipvthitmlvlsmtil*lqtcngltilcsleetp
mvpglelillietgytlfsgiwllmd*pcci*vkhpikmgwvcttevtqi*lvaqgfggl
qmqdh*kwqmpkf*ciievlmvqllvmlsgsfqylgaqkivstrvv*rnlnfvmvqvngi
fsmqllp---


Frame B:
yytsyk*lspneifikn*fidlffcefl*ltslcwyyr*qfynskhamv*ryyvh*kkrq
wcla*s*ff*lkrgilcfreygsswidlavyr*sipsrwdgfvpqrllryswspkvlgds
kckttrngkcpnfnvl*rf*wsscwsc*vvpfsiwvprk*fqrgwfkgisillwcrsmef
fpcncsr---


Frame C:
iilhinnylqmkfllkinllifffvnscnshhyvgiiddnsitpnmqwfndimfirrnan
gawprvnsfn*NGVYFVFGNMAPHGLTLLYIGKASHQDGMGLYHRGYSDIVGRPRFWGTP
NARPLEMANAQILMYYRGFDGPVAGHAEWFLSVFGCPENSFNEGGLKESQFCYGAGQWNF
FHATAPA---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD588 (CFD588Q) /CSM/CF/CFD5-D/CFD588Q.Seq.d/ 1065 0.0
CFJ231 (CFJ231Q) /CSM/CF/CFJ2-B/CFJ231Q.Seq.d/ 1049 0.0
SFF131 (SFF131Q) /CSM/SF/SFF1-B/SFF131Q.Seq.d/ 973 0.0
AFN861 (AFN861Q) /CSM/AF/AFN8-C/AFN861Q.Seq.d/ 955 0.0
CHD730 (CHD730Q) /CSM/CH/CHD7-B/CHD730Q.Seq.d/ 656 0.0
SFJ512 (SFJ512Q) /CSM/SF/SFJ5-A/SFJ512Q.Seq.d/ 541 e-153
SHA540 (SHA540Q) /CSM/SH/SHA5-B/SHA540Q.Seq.d/ 531 e-150
CHL386 (CHL386Q) /CSM/CH/CHL3-D/CHL386Q.Seq.d/ 424 e-118
SFG383 (SFG383Q) /CSM/SF/SFG3-D/SFG383Q.Seq.d/ 293 1e-78
CHB224 (CHB224Q) /CSM/CH/CHB2-A/CHB224Q.Seq.d/ 287 9e-77

own update 2002.11.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 283 e-100 3
AF147052|AF147052.1 Ochetellus sp. ACBM cytochrome c oxidase subunit 1 (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome c oxidase subunit 2 (COII) gene, partial cds; mitochondrial genes for mitochondrial products. 40 0.005 2
AX196296|AX196296.1 Sequence 3 from Patent WO0151627. 50 0.034 1
AX196295|AX196295.1 Sequence 2 from Patent WO0151627. 50 0.034 1
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 34 0.041 7
AC126686|AC126686.3 Mus musculus BAC clone RP23-148C24 from 18, complete sequence. 42 0.088 7
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2. 38 0.11 9
AX347045|AX347045.1 Sequence 2116 from Patent WO0200928. 48 0.14 1
AF426275|AF426275.1 Cicadetta celis large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. 44 0.17 2
AX345795|AX345795.1 Sequence 866 from Patent WO0200928. 36 0.23 4
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF139914_1(AF139914|pid:none) Xenopus laevis basic-helix-loop-he... 35 1.4
AF022798_1(AF022798|pid:none) Xenopus laevis basic-helix-loop-he... 35 1.4
AM180355_2873(AM180355|pid:none) Clostridium difficile 630 compl... 34 2.3
AM480090_2(AM480090|pid:none) Vitis vinifera contig VV78X100082.... 34 2.3
CP000108_29(CP000108|pid:none) Chlorobium chlorochromatii CaD3, ... 33 4.0
AF383159_1(AF383159|pid:none) Xenopus laevis hairy2a mRNA, compl... 33 4.0
AK107187_1(AK107187|pid:none) Oryza sativa Japonica Group cDNA c... 33 6.9
AC020665_1(AC020665|pid:none) Arabidopsis thaliana chromosome 1 ... 33 6.9
CP000158_1537(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 32 9.0
(Q6E3C9) RecName: Full=Cytoplasmic polyadenylation element-bindi... 32 9.0
protein update 2009. 5.13
PSORT

psg: 0.90 gvh: 0.41 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CFD588 is cyt

5' end seq. ID CFD588F
5' end seq.
>CFD588F.Seq
ATATTATACTTCATATAAATAACTATCTCCAAATGAAATTTTTATTAAAAATTAATTTAT
TGATCTTTTTTTTTGTGAATTCCTGTAACTCACATCACTATGTTGGTATTATCGATGACA
ATTCTATAACTCCAAACATGCAATGGTTTAACGATATTATGTTCATTAGAAGAAACGCCA
ATGGTGCCTGGCCTAGAGTTAATTCTTTTAATTGAAACGGGGTATACTTTGTTTTCGGGA
ATATGGCTCCTCATGGATTGACCTTGCTGTATATAGGTAAAGCATCCCATCAAGATGGGA
TGGGTTTGTACCACAGAGGTTACTCAGATATAGTTGGTCGCCCAAGGTTTTGGGGGACTC
CAAATGCAAGACCACTAGAAATGGCAAATGCCCAAATTTTAATGTATTATAGAGGTTTTG
ATGGTCCAGTTGCTGGTCATGCTGAGTGGTTCCTTTCAGTATTTGGGTGCCCAGAAAATA
GTTTCAACGAGGGTGGTTTAAAGGAATCTCAATTTTGTTATGGTGCAGGTCAATGGAATT
TTTTCCATGCAACTGCTCCCGCAG----------
Length of 5' end seq. 564
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -