>CFD586 (CFD586Q) /CSM/CF/CFD5-D/CFD586Q.Seq.d/
AATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGTCTGT
AACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAGCAAT
TAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAG
AAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCACTGT
TGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACG
TATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGG
TGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGG
TAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCAC
TGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGCCGC
CACTGGTAGTGAAGATTTTGCAGTCAATTGGTTCGAAGGXXXXXXXXXX

IFVFIYLFIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIR
NVKNPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNG
AILDIAWTSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAA
TGSEDFAVNWFE---

Frame A:
nfciyifiylyk*tthynvcnfkkyyctntsnysw*issn*w*pkg*kycickw*qyyy*
kckesngsryll*tsmsnhcckvctkw*lyckw*csr*ftylgyitkgtylksnlqsiew
cnp*ycmdir*stfscsw*w*reiwcshplg*wfimw*nhwslkddsll*h*inssiqsr
hw**rfcsqlvr---


Frame B:
IFVFIYLFIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIR
NVKNPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNG
AILDIAWTSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAA
TGSEDFAVNWFE---


Frame C:
flylyiylfi*inytl*cl*l*killhqhqqllvvnq*qlmvtqrvkilymqvvavllle
m*riqw*qiftmnihvkpllqsmhqvviilqvvmfkviyvfgihykrnis*kqltky*mv
qslilhghqiinv*l*lvmvkrdlvqpsfgivvhhvvkslvtqr*fslvtlnqlvhsepp
lvvkilqsigsk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH724 (SFH724Q) /CSM/SF/SFH7-A/SFH724Q.Seq.d/                       1082   0.0
SFH408 (SFH408Q) /CSM/SF/SFH4-A/SFH408Q.Seq.d/                       1082   0.0
SFH157 (SFH157Q) /CSM/SF/SFH1-C/SFH157Q.Seq.d/                       1082   0.0
SFE564 (SFE564Q) /CSM/SF/SFE5-C/SFE564Q.Seq.d/                       1082   0.0
CHA508 (CHA508Q) /CSM/CH/CHA5-A/CHA508Q.Seq.d/                       1082   0.0
CFH883 (CFH883Q) /CSM/CF/CFH8-D/CFH883Q.Seq.d/                       1082   0.0
CFG102 (CFG102Q) /CSM/CF/CFG1-A/CFG102Q.Seq.d/                       1082   0.0
CFE647 (CFE647Q) /CSM/CF/CFE6-B/CFE647Q.Seq.d/                       1082   0.0
CFD586 (CFD586Q) /CSM/CF/CFD5-D/CFD586Q.Seq.d/                       1082   0.0
CFB361 (CFB361Q) /CSM/CF/CFB3-C/CFB361Q.Seq.d/                       1082   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds.  1082   0.0    1
AF295546|AF295546.1 Malawimonas jakobiformis mitochondrial DNA, complete genome.    38   0.28   4
AC099651|AC099651.4 Homo sapiens BAC clone RP11-685B22 from 7, complete sequence.    46   0.55   1
AL953841|AL953841.5 Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22.    32   0.69   8
BX649555|BX649555.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-117C13.    40   1.3    5
AC147254|AC147254.2 Mus musculus chromosome UNK clone RP24-147G7, *** SEQUENCING IN PROGRESS ***, 32 unordered pieces.    38   1.4    3
AC127566|AC127566.3 Mus musculus BAC clone RP24-187F3 from chromosome 5, complete sequence.    38   1.4    5
AL360230|AL360230.20 Human DNA sequence from clone RP11-379I13 on chromosome 10.    34   1.5    6
AL954688|AL954688.9 Zebrafish DNA sequence from clone CH211-212L1 in linkage group 4.    34   1.6    8
AC074131|AC074131.3 Homo sapiens chromosome 5 clone CTD-2232E5, complete sequence.    40   1.6    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p...   359   3e-98
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;...   260   2e-68
BT045059_1(BT045059|pid:none) Salmo salar clone ssal-rgf-510-334...   222   6e-57
AY394939_1(AY394939|pid:none) Danio rerio clone RK046A1C09 WD re...   221   1e-56
(O93277) RecName: Full=WD repeat-containing protein 1; AltName: ...   220   2e-56
AB084171_1(AB084171|pid:none) Cavia porcellus WDR1 mRNA for WD r...   219   4e-56
(Q5RKI0) RecName: Full=WD repeat-containing protein 1;  &AY98648...   218   7e-56
(O75083) RecName: Full=WD repeat-containing protein 1; AltName: ...   218   7e-56
AK004858_1(AK004858|pid:none) Mus musculus adult male liver cDNA...   218   9e-56
CR860191_1(CR860191|pid:none) Pongo abelii mRNA; cDNA DKFZp469E0...   218   9e-56

 psg: 0.98  gvh: 0.37  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.32  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFD586 is nuc

>CFD586F.Seq
AATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGTCTGT
AACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAGCAAT
TAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAG
AAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCACTGT
TGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACG
TATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGG
TGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGG
TAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCAC
TGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGCCGC
CACTGGTAGTGAAGATTTTGCAGTCAATTGGTTCGAAGG----------