CFD581
Library CF
(Link to library)
Clone ID CFD581
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID CFD581F
(Link to Original site)
Representative DNA sequence
>CFD581 (CFD581Q) /CSM/CF/CFD5-D/CFD581Q.Seq.d/
ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTA
ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT
GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA
CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT
ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA
ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA
AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC
GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT
ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA
GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCA
AAATCATATCGTCATATGCATGGTTTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE
RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL
GQTPESTHQVSILFSDRGTPKSYRHMHG---


Translated Amino Acid sequence (All Frames)
Frame A:
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE
RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL
GQTPESTHQVSILFSDRGTPKSYRHMHG---


Frame B:
yilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivn
vsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilk
eiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif*
vkhqnqhikyqfyslievhqnhivicmv---


Frame C:
ifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*t
yprtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*k
rskrfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlgffr
sntrintssinfil**rytkiissyaw---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/ 1156 0.0
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/ 1156 0.0
VFA593 (VFA593Q) /CSM/VF/VFA5-D/VFA593Q.Seq.d/ 1156 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1156 0.0
CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/ 1156 0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1156 0.0
CFD581 (CFD581Q) /CSM/CF/CFD5-D/CFD581Q.Seq.d/ 1156 0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/ 1156 0.0
AFO219 (AFO219Q) /CSM/AF/AFO2-A/AFO219Q.Seq.d/ 1156 0.0
AFN684 (AFN684Q) /CSM/AF/AFN6-D/AFN684Q.Seq.d/ 1156 0.0

own update 2001.12. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1156 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 868 0.0 10
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 6e-45 5
AP004595|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. 72 5e-24 5
AX536932|AX536932.1 Sequence 533 from Patent WO02064766. 101 8e-18 2
AX920925|AX920925.1 Sequence 28 from Patent EP1350796. 98 2e-16 1
AE006036|AE006036.1 Pasteurella multocida PM70 section 3 of 204 of the complete genome. 98 2e-16 1
CB887115|CB887115.1 Lice_02_H21_T3 Body louse cDNA library Pediculus humanus cDNA, mRNA sequence. 52 1e-15 4
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 68 2e-15 3
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 2e-15 2
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 408 e-113
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 313 3e-84
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 308 1e-82
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 300 2e-80
(Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 294 2e-78
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 291 8e-78
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 291 8e-78
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 287 1e-76
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 286 3e-76
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili... 286 3e-76
protein update 2009. 5.13
PSORT

psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: extracellular, including cell wall
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CFD581 is cyt

5' end seq. ID CFD581F
5' end seq.
>CFD581F.Seq
ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTA
ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT
GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA
CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT
ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA
ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA
AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC
GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT
ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA
GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCA
AAATCATATCGTCATATGCATGGTTT----------
Length of 5' end seq. 626
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -