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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD579
Library CF
(Link to library)
Clone ID CFD579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFD579P
(Link to Original site)
Representative DNA sequence 
>CFD579 (CFD579Q) /CSM/CF/CFD5-D/CFD579Q.Seq.d/
AAATNATTGTAGTATTTTGTTCATCTTCAAATTAAATATCAATACAATTAAAAAAAGTTA
AAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCN
AAAAAAAAAXXXXXXXXXXCAACCAANATCCCTTGATTGGGCTGAAAATGAAAATGATGA
TCGNGNCTATNATGATCGTGACTATNATGATGATGAATATGATGGTGATTATGATGGCCG
TGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGA
TGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGN
TTGGGNCAATGAAGATGGTGATAATTGGAATGATGATGNCGTNCCAAGATGCAAATGATG
AATGGGACTATTAAGCCTTNTTTTTTAAAAAAAAANAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kxl*yfvhlqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---NQXPLIGLKMKMMIXXXMIVTXMMMNMMVIMMAVTVTMMVIMMVIMMMTIIMVMMTM
IMIGTMIMIGVMIGIMXGXMKMVIIGMMMXXQDANDEWDY*axffkkkx
Translated Amino Acid sequence (All Frames) 
Frame A:
kxl*yfvhlqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---qpxsldwaenenddrxyxdrdyxddeydgdydgrdgdydgdydgdydddnyygdddy
dndwdndndwgndwdnxwxnedgdnwnddxvprck**mgllslxf*kkx

Frame B:
nxcsilfifklnintikks*n*ickinl*qklvi*kkknxkk---

---NQXPLIGLKMKMMIXXXMIVTXMMMNMMVIMMAVTVTMMVIMMVIMMMTIIMVMMTM
IMIGTMIMIGVMIGIMXGXMKMVIIGMMMXXQDANDEWDY*axffkkkx

Frame C:
xivvfcsssn*isiqlkkvkikfvksicnkn**fkkkktxkk---

---txip*lg*k*k**sxlx*s*lx***i*w*l*wp*r*l*w*l*w*l***qllw***l*
**lgq***lg**lg*xlgq*rw**le**xrxkmqmmngtikpxflkkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD579 (CFD579Q) /CSM/CF/CFD5-D/CFD579Q.Seq.d/                        220   1e-56
CFD769 (CFD769Q) /CSM/CF/CFD7-C/CFD769Q.Seq.d/                        200   1e-50
SLK887 (SLK887Q) /CSM/SL/SLK8-D/SLK887Q.Seq.d/                        192   3e-48
SLJ765 (SLJ765Q) /CSM/SL/SLJ7-C/SLJ765Q.Seq.d/                        192   3e-48
SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/                        192   3e-48
SLJ631 (SLJ631Q) /CSM/SL/SLJ6-B/SLJ631Q.Seq.d/                        192   3e-48
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        192   3e-48
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        192   3e-48
SLI663 (SLI663Q) /CSM/SL/SLI6-C/SLI663Q.Seq.d/                        192   3e-48
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/                        192   3e-48
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   143   2e-68  4
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   143   1e-65  6
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   143   2e-62  8
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   143   8e-61  3
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    50   0.027  1
AC095461|AC095461.6 Rattus norvegicus clone CH230-7H4, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    46   0.42   1
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    46   0.42   1
AC067903|AC067903.13 Homo sapiens, clone RP11-740O11, complete sequence.    42   6.6    1
AC023438|AC023438.3 Homo sapiens clone RP11-21N8, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42   6.6    1
AP005015|AP005015.1 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1246B1, complete sequence.    42   6.6    1
dna update 2003. 9.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 201,812,665
protein update 2009. 5.13
PSORT 

 psg: 0.16  gvh: 0.29  alm: 0.17  top: 0.20  tms: 0.20  mit: 0.31  mip: 0.00
 nuc: 0.22  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFD579 is pla
5' end seq. ID CFD579F
5' end seq. 
>CFD579F.Seq
AAATNATTGTAGTATTTTGTTCATCTTCAAATTAAATATCAATACAATTAAAAAAAGTTA
AAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCN
AAAAAAAAA----------
Length of 5' end seq. 129
3' end seq. ID CFD579Z
3' end seq. 
>CFD579Z.Seq
----------CAACCAANATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGNGNCTA
TNATGATCGTGACTATNATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGA
CTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGATGATGACTA
TGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGNTTGGGNCAA
TGAAGATGGTGATAATTGGAATGATGATGNCGTNCCAAGATGCAAATGATGAATGGGACT
ATTAAGCCTTNTTTTTTAAAAAAAAANAA
Length of 3' end seq. 319
Connected seq. ID CFD579P
Connected seq. 
>CFD579P.Seq
AAATNATTGTAGTATTTTGTTCATCTTCAAATTAAATATCAATACAATTAAAAAAAGTTA
AAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCN
AAAAAAAAA----------CAACCAANATCCCTTGATTGGGCTGAAAATGAAAATGATGA
TCGNGNCTATNATGATCGTGACTATNATGATGATGAATATGATGGTGATTATGATGGCCG
TGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGA
TGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGN
TTGGGNCAATGAAGATGGTGATAATTGGAATGATGATGNCGTNCCAAGATGCAAATGATG
AATGGGACTATTAAGCCTTNTTTTTTAAAAAAAAANAA
Length of connected seq. 448
Full length Seq ID -
Full length Seq. -
Length of full length seq. -