CFD569
Library CF
(Link to library)
Clone ID CFD569
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12580-1
Original site URL
Representative seq. ID CFD569F
(Link to Original site)
Representative DNA sequence
>CFD569 (CFD569Q) /CSM/CF/CFD5-C/CFD569Q.Seq.d/
ACTTTTACTTNATAACTAATAATATATTAATAATGTCAGTACATCCAAGAAACCAAGGTA
AAGATGATTGTTGTGAAAAAACACATCTTGATAGTCAATACTCTCCGGGTTATTACTGGT
TAGGTAATAATACATTAAAAGTACCATTAGTTTTACATAAAGAAAATAGACAAAGATTAG
TTTCTCAAATTTTATCAAAACATAAAGATCAAGTTAAAGAAAATTCATTTATTTTATTAG
AAAGTGGTAAATCAACAATGCAATATGATACAGATCATGAACCATTATTTAAACAAGAAA
GATACTTTTTTTGGACATTTGGTTCAGATATTCCAGATTGTTTTGGTATTGTTGGATTGG
ATGAACAAGCAACTAGTATTTTATGTATTCCAAAATTGCCAGCTGAATATGCAACATGGA
TGGGAGAAATTCGTTCAAAAGAATACTATAAATCGATCTTTTTAGTCGACCAAGTATTAT
ATGTCGATGAGATGATGGATTACTTAAAGAGTAAGAACGCATCCACAATCTACACCATCT
TGGGTACCAACACCGATAGTGGCTCAACATTTGTAGAACCACAATATCCAGGTTTAAGAG
AGACTTTCAATGTAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
FYXITNNILIMSVHPRNQGKDDCCEKTHLDSQYSPGYYWLGNNTLKVPLVLHKENRQRLV
SQILSKHKDQVKENSFILLESGKSTMQYDTDHEPLFKQERYFFWTFGSDIPDCFGIVGLD
EQATSILCIPKLPAEYATWMGEIRSKEYYKSIFLVDQVLYVDEMMDYLKSKNASTIYTIL
GTNTDSGSTFVEPQYPGLRETFNV---


Translated Amino Acid sequence (All Frames)
Frame A:
tftx*liiy**cqyiqetkvkmivvkkhilivntlrvitg*viih*kyh*fyikkidkd*
flkfyqnikiklkkihlfy*kvvnqqcnmiqimnhylnkkdtffghlvqifqivlvlldw
mnkqlvfyvfqncqlnmqhgwekfvqkntinrsf*stkyymsmr*wit*rvrthpqstps
wvptpivaqhl*nhniqv*erlsm*---


Frame B:
lllxn**yinnvstskkpr*r*ll*knts**silsglllvr**yikstisft*rk*tkis
fsnfikt*rss*rkfiyfirkw*innai*yrs*tii*trkilfldiwfrysrlfwycwig
*tsn*yfmyskias*icnmdgrnsfkril*idlfsrpsiicr*ddgllke*erihnlhhl
gyqhr*wlnicrttisrfkrdfqc---


Frame C:
FYXITNNILIMSVHPRNQGKDDCCEKTHLDSQYSPGYYWLGNNTLKVPLVLHKENRQRLV
SQILSKHKDQVKENSFILLESGKSTMQYDTDHEPLFKQERYFFWTFGSDIPDCFGIVGLD
EQATSILCIPKLPAEYATWMGEIRSKEYYKSIFLVDQVLYVDEMMDYLKSKNASTIYTIL
GTNTDSGSTFVEPQYPGLRETFNV---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD569 (CFD569Q) /CSM/CF/CFD5-C/CFD569Q.Seq.d/ 1174 0.0
AFO605 (AFO605Q) /CSM/AF/AFO6-A/AFO605Q.Seq.d/ 1152 0.0
SFK478 (SFK478Q) /CSM/SF/SFK4-D/SFK478Q.Seq.d/ 1138 0.0
VFH412 (VFH412Q) /CSM/VF/VFH4-A/VFH412Q.Seq.d/ 1136 0.0
VFJ543 (VFJ543Q) /CSM/VF/VFJ5-B/VFJ543Q.Seq.d/ 1134 0.0
SFC418 (SFC418Q) /CSM/SF/SFC4-A/SFC418Q.Seq.d/ 1126 0.0
AFL571 (AFL571Q) /CSM/AF/AFL5-C/AFL571Q.Seq.d/ 1122 0.0
VFJ570 (VFJ570Q) /CSM/VF/VFJ5-C/VFJ570Q.Seq.d/ 1120 0.0
VFL351 (VFL351Q) /CSM/VF/VFL3-C/VFL351Q.Seq.d/ 1100 0.0
SFD246 (SFD246Q) /CSM/SF/SFD2-B/SFD246Q.Seq.d/ 1080 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 34 2e-04 11
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 36 0.011 11
AC006874|AC006874.1 Caenorhabditis elegans clone Y54E10, WORKING DRAFT SEQUENCE, 3 unordered pieces. 36 0.028 8
AP001118|AP001118.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 1/2. 32 0.030 13
CC949998|CC949998.1 BOICI27TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOICI27, genomic survey sequence. 50 0.038 1
CC949988|CC949988.1 BOICI27TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOICI27, genomic survey sequence. 50 0.038 1
CA922371|CA922371.1 EST640089 MTUS Medicago truncatula cDNA clone MTUS-52H4, mRNA sequence. 50 0.038 1
BH729149|BH729149.1 BOMLV23TF BO_2_3_KB Brassica oleracea genomic clone BOMLV23, DNA sequence. 50 0.038 1
AE001367|AE001367.1 Plasmodium falciparum chromosome 2, section 4 of 73 of the complete sequence. 36 0.051 5
AE014306|AE014306.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 3 of 11 of the complete sequence. 38 0.067 7
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55E60) RecName: Full=Xaa-Pro dipeptidase; Short=X-Pro... 406 e-112
(Q5RFB3) RecName: Full=Xaa-Pro dipeptidase; Short=X-Pro... 147 3e-34
EU477530_1(EU477530|pid:none) Gallus gallus peptidase D (PEPD) m... 146 5e-34
(P12955) RecName: Full=Xaa-Pro dipeptidase; Short=X-Pro... 146 5e-34
DQ000560_1(DQ000560|pid:none) Synthetic construct clone PSF:1092... 146 5e-34
AY892159_1(AY892159|pid:none) Synthetic construct Homo sapiens c... 146 5e-34
BC028295_1(BC028295|pid:none) Homo sapiens peptidase D, mRNA (cD... 146 5e-34
AJ720071_1(AJ720071|pid:none) Gallus gallus mRNA for hypothetica... 145 9e-34
AK290756_1(AK290756|pid:none) Homo sapiens cDNA FLJ75447 complet... 144 1e-33
S72196(S72196)X-Pro dipeptidase (EC 3.4.13.9) - mouse 136 5e-31
protein update 2009. 5.13
PSORT

psg: 0.88 gvh: 0.36 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for CFD569 is cyt

5' end seq. ID CFD569F
5' end seq.
>CFD569F.Seq
ACTTTTACTTNATAACTAATAATATATTAATAATGTCAGTACATCCAAGAAACCAAGGTA
AAGATGATTGTTGTGAAAAAACACATCTTGATAGTCAATACTCTCCGGGTTATTACTGGT
TAGGTAATAATACATTAAAAGTACCATTAGTTTTACATAAAGAAAATAGACAAAGATTAG
TTTCTCAAATTTTATCAAAACATAAAGATCAAGTTAAAGAAAATTCATTTATTTTATTAG
AAAGTGGTAAATCAACAATGCAATATGATACAGATCATGAACCATTATTTAAACAAGAAA
GATACTTTTTTTGGACATTTGGTTCAGATATTCCAGATTGTTTTGGTATTGTTGGATTGG
ATGAACAAGCAACTAGTATTTTATGTATTCCAAAATTGCCAGCTGAATATGCAACATGGA
TGGGAGAAATTCGTTCAAAAGAATACTATAAATCGATCTTTTTAGTCGACCAAGTATTAT
ATGTCGATGAGATGATGGATTACTTAAAGAGTAAGAACGCATCCACAATCTACACCATCT
TGGGTACCAACACCGATAGTGGCTCAACATTTGTAGAACCACAATATCCAGGTTTAAGAG
AGACTTTCAATGTAAA----------
Length of 5' end seq. 616
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -