CFD561
Library CF
(Link to library)
Clone ID CFD561
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFD561F
(Link to Original site)
Representative DNA sequence
>CFD561 (CFD561Q) /CSM/CF/CFD5-C/CFD561Q.Seq.d/
ATTTTTCATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAA
GAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTT
CTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTT
GTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTA
TTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGG
GAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAG
CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC
AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG
GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTG
CCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATG
TCGCAGAGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
FSYLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAIC
KAKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLA
GLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVA
QEDPIISGCYNTMGQTSENVA---


Translated Amino Acid sequence (All Frames)
Frame A:
ifhiyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqf
vklkeehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*
qvyqrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrl
pkriqslvvvttlwvkplkmsq---


Frame B:
ffifiynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl
*s*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiis
rftkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgc
prgsnh*wllqhygsnl*kcrr---


Frame C:
FSYLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAIC
KAKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLA
GLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVA
QEDPIISGCYNTMGQTSENVA---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD561 (CFD561Q) /CSM/CF/CFD5-C/CFD561Q.Seq.d/ 1205 0.0
SFH187 (SFH187Q) /CSM/SF/SFH1-D/SFH187Q.Seq.d/ 1203 0.0
AFA747 (AFA747Q) /CSM/AF/AFA7-B/AFA747Q.Seq.d/ 1197 0.0
VFK412 (VFK412Q) /CSM/VF/VFK4-A/VFK412Q.Seq.d/ 1193 0.0
AFG267 (AFG267Q) /CSM/AF/AFG2-C/AFG267Q.Seq.d/ 1193 0.0
VFM636 (VFM636Q) /CSM/VF/VFM6-B/VFM636Q.Seq.d/ 1191 0.0
CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/ 1191 0.0
AFE623 (AFE623Q) /CSM/AF/AFE6-A/AFE623Q.Seq.d/ 1191 0.0
SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/ 1189 0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/ 1187 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 954 0.0 8
BF519425|BF519425.1 EST456888 DSIL Medicago truncatula cDNA clone pDSIL-20L15, mRNA sequence. 40 3e-04 3
BE323358|BE323358.2 NF002H04PL1F1032 Phosphate starved leaf Medicago truncatula cDNA clone NF002H04PL 5', mRNA sequence. 40 3e-04 3
BF650514|BF650514.1 NF097F05EC1F1045 Elicited cell culture Medicago truncatula cDNA clone NF097F05EC 5', mRNA sequence. 40 4e-04 3
AW774616|AW774616.1 EST333767 KV3 Medicago truncatula cDNA clone pKV3-23K13, mRNA sequence. 40 4e-04 3
BI264284|BI264284.1 NF120F03PL1F1031 Phosphate starved leaf Medicago truncatula cDNA clone NF120F03PL 5', mRNA sequence. 40 4e-04 3
BG586707|BG586707.1 EST488475 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-44F11 5' end, mRNA sequence. 40 4e-04 3
BG647334|BG647334.1 EST508953 HOGA Medicago truncatula cDNA clone pHOGA-16H23 5' end, mRNA sequence. 40 5e-04 3
CB893116|CB893116.1 EST645908 HOGA Medicago truncatula cDNA clone HOGA-26H20, mRNA sequence. 40 5e-04 3
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence. 40 5e-04 3
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 374 e-102
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 190 3e-47
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 190 3e-47
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 189 7e-47
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 188 9e-47
BT051821_1(BT051821|pid:none) Medicago truncatula clone MTYF5_F6... 186 6e-46
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15... 184 2e-45
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789. 184 2e-45
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 183 3e-45
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 182 6e-45
protein update 2009. 5.13
PSORT

psg: 0.91 gvh: 0.40 alm: 0.43 top: 0.57 tms: 0.00 mit: 0.33 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CFD561 is nuc

5' end seq. ID CFD561F
5' end seq.
>CFD561F.Seq
ATTTTTCATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAA
GAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTT
CTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTT
GTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTA
TTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGG
GAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAG
CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC
AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG
GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTG
CCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATG
TCGCAGAG----------
Length of 5' end seq. 608
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -