CFD559
Library CF
(Link to library)
Clone ID CFD559
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11472-1
Original site URL
Representative seq. ID CFD559F
(Link to Original site)
Representative DNA sequence
>CFD559 (CFD559Q) /CSM/CF/CFD5-C/CFD559Q.Seq.d/
CTAAAGTAGGAGCAGATATTATAGAATTACAAGCATCATTATTGAATAGACCAGCAAGAA
AACAAGCTACACATGTAAATTCAAGATATGAAGATCATGATACAGATACCACTGAATACA
ATATATGGTATCATAAGAAATTAGGTAATAGAAATTGGAAAGATAGAGATGTTTCAGAGA
CTAGATGTAATGTTTTAAAGGATTGTGGTAAAACACGTGCTAATAAAGACGCAAATTTCT
GTTGTTACTTTGCAAGGGGTAAATGTATAAATGGTGCCGACTGTACATCCCTTCATCGTA
TACCAACTCCTGAAGATGATAAACGTCTAAGATTAACTCATGATATATTTGGTAGAGAAA
GACATAAAACTGACAGAGACGATATGAATGGTGTTGGTAGTTTTAGTAGAGATAATAGAA
CATTATATATTGGTGGTATTAAAACCAATGTTAGTGGATCACTTGAAGATATGGTAAGAA
AGAATTTTGAAGAATGGGGTAGAATTGAATATGTTCGTGTAATTACTAATAGATCGATAT
CATTCGTTAGATATTTAACAAGATCGTCAGCAGAGTTTGCCAAGGAGGCAATGACAGATC
AAACATTGGATAATGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
KVGADIIELQASLLNRPARKQATHVNSRYEDHDTDTTEYNIWYHKKLGNRNWKDRDVSET
RCNVLKDCGKTRANKDANFCCYFARGKCINGADCTSLHRIPTPEDDKRLRLTHDIFGRER
HKTDRDDMNGVGSFSRDNRTLYIGGIKTNVSGSLEDMVRKNFEEWGRIEYVRVITNRSIS
FVRYLTRSSAEFAKEAMTDQTLDN---


Translated Amino Acid sequence (All Frames)
Frame A:
lk*eqil*nykhhy*idqqenklhm*iqdmkimiqiplntiygiirn*vieigkiemfqr
ldvmf*rivvkhvliktqisvvtlqgvnv*mvptvhpfivyqllkminv*d*lmiylvek
diklteti*mvlvvlveiiehyilvvlkpmlvdhlkiw*erilkngvelnmfv*llidry
hsldi*qdrqqslprrq*qikhwi---


Frame B:
*srsryyritsiiie*tskktsytckfki*rs*yryh*iqymvs*eir**kler*rcfrd
*m*cfkglw*ntc**rrkfllllckg*mykwcrlyipssytns*r**tskins*yiw*rk
t*n*qrryewcw*f**r**niiywwy*nqc*wit*rygkkef*rmg*n*icscny**idi
ir*ifnkivsrvcqggndrsnig*---


Frame C:
KVGADIIELQASLLNRPARKQATHVNSRYEDHDTDTTEYNIWYHKKLGNRNWKDRDVSET
RCNVLKDCGKTRANKDANFCCYFARGKCINGADCTSLHRIPTPEDDKRLRLTHDIFGRER
HKTDRDDMNGVGSFSRDNRTLYIGGIKTNVSGSLEDMVRKNFEEWGRIEYVRVITNRSIS
FVRYLTRSSAEFAKEAMTDQTLDN---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD559 (CFD559Q) /CSM/CF/CFD5-C/CFD559Q.Seq.d/ 1219 0.0
AFB210 (AFB210Q) /CSM/AF/AFB2-A/AFB210Q.Seq.d/ 876 0.0
AFK114 (AFK114Q) /CSM/AF/AFK1-A/AFK114Q.Seq.d/ 864 0.0
CFH892 (CFH892Q) /CSM/CF/CFH8-D/CFH892Q.Seq.d/ 858 0.0
AFM391 (AFM391Q) /CSM/AF/AFM3-D/AFM391Q.Seq.d/ 835 0.0
AFC551 (AFC551Q) /CSM/AF/AFC5-C/AFC551Q.Seq.d/ 827 0.0
CFH708 (CFH708Q) /CSM/CF/CFH7-A/CFH708Q.Seq.d/ 819 0.0
SFK445 (SFK445Q) /CSM/SF/SFK4-B/SFK445Q.Seq.d/ 710 0.0
VFG622 (VFG622Q) /CSM/VF/VFG6-A/VFG622Q.Seq.d/ 632 e-180
CFE863 (CFE863Q) /CSM/CF/CFE8-C/CFE863Q.Seq.d/ 285 4e-76

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ688117|AZ688117.1 ENTJF89TF Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence. 48 7e-05 3
AL365190|AL365190.16 Human DNA sequence from clone RP11-512H14 on chromosome 9. 40 0.021 6
AC016028|AC016028.4 Homo sapiens clone RP11-45G6, WORKING DRAFT SEQUENCE, 2 ordered pieces. 46 0.11 7
AL139318|AL139318.9 Human DNA sequence from clone RP11-124B17 on chromosome 13. Contains the DCT gene for dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2), the 3' end of the gene for DTDP-D-glucose 4,6-dehydratase, ESTs, STSs, GSSs and a CpG island. 32 0.19 8
AC105129|AC105129.4 Homo sapiens chromosome 15, clone RP11-349G13, complete sequence. 34 0.20 8
AC026333|AC026333.28 Homo sapiens 12 BAC RP11-324E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 34 0.24 7
AC139018|AC139018.1 Homo sapiens chromosome 18 clone CTD-2373O13 map 18, LOW-PASS SEQUENCE SAMPLING. 36 0.36 6
AC092500|AC092500.2 Homo sapiens chromosome 3 clone RP11-111P21, complete sequence. 34 0.42 7
AP001379|AP001379.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-850H3, WORKING DRAFT SEQUENCE, 21 unordered pieces. 34 0.44 8
AC019309|AC019309.3 Homo sapiens chromosome 11 clone RP11-511I1 map 11, WORKING DRAFT SEQUENCE, 32 unordered pieces. 34 0.46 7
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX538353_40(BX538353|pid:none) Cryptosporidium parvum chromosome... 165 8e-40
(Q6T412) RecName: Full=Pre-mRNA-splicing factor CWC2; &AY437641... 163 4e-39
AP007164_186(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 160 3e-38
(Q5BB35) RecName: Full=Pre-mRNA-splicing factor cwc2; 160 3e-38
(Q4WU07) RecName: Full=Pre-mRNA-splicing factor cwc2; 159 6e-38
CU640366_1127(CU640366|pid:none) Podospora anserina genomic DNA ... 157 3e-37
AL670010_10(AL670010|pid:none) Neurospora crassa DNA linkage gro... 155 7e-37
AM920436_1795(AM920436|pid:none) Penicillium chrysogenum Wiscons... 152 9e-36
T38679(T38679)hypothetical rna binding protein - fission yeast ... 145 7e-34
(Q6C007) RecName: Full=Pre-mRNA-splicing factor CWC2; &CR382132... 144 3e-33
protein update 2009. 5.13
PSORT

psg: 0.75 gvh: 0.31 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CFD559 is cyt

5' end seq. ID CFD559F
5' end seq.
>CFD559F.Seq
CTAAAGTAGGAGCAGATATTATAGAATTACAAGCATCATTATTGAATAGACCAGCAAGAA
AACAAGCTACACATGTAAATTCAAGATATGAAGATCATGATACAGATACCACTGAATACA
ATATATGGTATCATAAGAAATTAGGTAATAGAAATTGGAAAGATAGAGATGTTTCAGAGA
CTAGATGTAATGTTTTAAAGGATTGTGGTAAAACACGTGCTAATAAAGACGCAAATTTCT
GTTGTTACTTTGCAAGGGGTAAATGTATAAATGGTGCCGACTGTACATCCCTTCATCGTA
TACCAACTCCTGAAGATGATAAACGTCTAAGATTAACTCATGATATATTTGGTAGAGAAA
GACATAAAACTGACAGAGACGATATGAATGGTGTTGGTAGTTTTAGTAGAGATAATAGAA
CATTATATATTGGTGGTATTAAAACCAATGTTAGTGGATCACTTGAAGATATGGTAAGAA
AGAATTTTGAAGAATGGGGTAGAATTGAATATGTTCGTGTAATTACTAATAGATCGATAT
CATTCGTTAGATATTTAACAAGATCGTCAGCAGAGTTTGCCAAGGAGGCAATGACAGATC
AAACATTGGATAATG----------
Length of 5' end seq. 615
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -