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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD557
Library CF
(Link to library)
Clone ID CFD557
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID CFD557E
(Link to Original site)
Representative DNA sequence 
>CFD557 (CFD557Q) /CSM/CF/CFD5-C/CFD557Q.Seq.d/
GAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCAT
TTACGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACT
ATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAAC
CATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTA
CCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCC
CACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACC
TTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAA
ATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATG
CAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTC
AATTTTTCTGGGAGTTTAATCCCAAAGGAATATTATTTTAACATGTGCTGATATAATGAT
TTCCAGTGGAGGTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAATACCC
ACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACA
AGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAG
AGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAA
ATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGC
AAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGG
AAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAG
AACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCT
CTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATC
ATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTNCTATA
GAAATGAATTNCTATGCTATTACNCTANCTGGTTATGATGNTTNCAAATAGTG
sequence update 2001. 6. 9
Translated Amino Acid sequence 
niifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*il*ttrrwflipkr*ihkt
ipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlptmaskkpcdcikswyr*flp
fskndircsrrsksrcilpkfnpfkpiwklykil*kyk*cnmycmf*ftngyfsrfiyss
iflgv*SQRNIILTCADIMISSGGAYHYHEPQRPSREEYPQRPSREELQREERQRDQEEQ
AIRRKRQNDEYLELQREKEREQMQRDIERKAAAEESRKHKSTIFQYIMRDGKLEREFSSA
SWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTLNINILGFKEIISNTQVNL
LTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRXL*k*ixmllxxlvmmxxns
Translated Amino Acid sequence (All Frames) 
Frame A:
eyyf*qyylyyylvklnhihlrnvwigilvqihvqhtqetidfmnnkamvsyskevnsqn
htqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfahngqqetmrlh*elvplvst
flqk*hqmlpqiqvkmysskiqsiqahletvqnimkiqimqhvlhvliyqwiflqvyiff
nfsgslipkeyyfnmc*yndfqwrcislp*ttktisrriptktis*rtskrrktkrsrrt
shkkketk**vs*iakrkrkrtnat*yrekscsrrvqkt*inhfpiyyerw*igkrilkc
klgsifkegg*il*n*tntwkcfil*mcnwiqlfik*rqknpqhqhfrf*rnhfkyss*p
lnqr*knstlnfirtih*fiiy**w*fiqyn*rstskixiemnxyaitlxgydxxk*


Frame B:
niifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*il*ttrrwflipkr*ihkt
ipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlptmaskkpcdcikswyr*flp
fskndircsrrsksrcilpkfnpfkpiwklykil*kyk*cnmycmf*ftngyfsrfiyss
iflgv*SQRNIILTCADIMISSGGAYHYHEPQRPSREEYPQRPSREELQREERQRDQEEQ
AIRRKRQNDEYLELQREKEREQMQRDIERKAAAEESRKHKSTIFQYIMRDGKLEREFSSA
SWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTLNINILGFKEIISNTQVNL
LTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRXL*k*ixmllxxlvmmxxns


Frame C:
ilfltvllvllfgkieshsftkcvdwdfgsnscaayprnyrfyeqqgdgflfqrgkftkp
yptelgqscgpaqrrsssitnlysskhpmgnfqagqkicpqwparnhatalragtvsfyl
spkmtsdapadpsqdvffqnsihsspfgnctkyyentnnatctacfdlpmdispglyilq
ffwefnpkgilf*hvli**fpvevhiitmnhkdhleknthkdhlvknfkekkdkeikknk
p*eerdkmmsilnckekkkenkcnvi*reklqqkspeninqpfsnil*emvnwkensqvq
vgvhiqrrrlnimkldqylemfyslnvqldpivyqvkakepststf*vlkksfqilklts
*pkvkkfhsqfh*nhtlihhllmmvihtiqlafhfkdxyrnexlcyyxxwl*xxqiv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD557 (CFD557Q) /CSM/CF/CFD5-C/CFD557Q.Seq.d/                       1340   0.0
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                       1298   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                       1298   0.0
CFJ451 (CFJ451Q) /CSM/CF/CFJ4-C/CFJ451Q.Seq.d/                       1298   0.0
CFJ290 (CFJ290Q) /CSM/CF/CFJ2-D/CFJ290Q.Seq.d/                       1298   0.0
CFJ214 (CFJ214Q) /CSM/CF/CFJ2-A/CFJ214Q.Seq.d/                       1298   0.0
CFI518 (CFI518Q) /CSM/CF/CFI5-A/CFI518Q.Seq.d/                       1298   0.0
CFG445 (CFG445Q) /CSM/CF/CFG4-B/CFG445Q.Seq.d/                       1298   0.0
CFF866 (CFF866Q) /CSM/CF/CFF8-C/CFF866Q.Seq.d/                       1298   0.0
CFF814 (CFF814Q) /CSM/CF/CFF8-A/CFF814Q.Seq.d/                       1298   0.0
own update 2001.12. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC106806|AC106806.2 Homo sapiens chromosome 5 clone RP11-510I6, complete sequence.    38   5e-04  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   0.001  24
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.003  17
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   0.004  16
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   0.006  14
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    36   0.007  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.026  19
AC131557|AC131557.4 Rattus norvegicus clone CH230-8O19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   0.028  9
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.030  14
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    36   0.037  12
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844506_202(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.079
CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    41   0.10
X77919_1(X77919|pid:none) C.burnetti Nine Mile RSA493 phase I ge...    40   0.18
CP001020_1310(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...    40   0.18
CP001019_562(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com...    40   0.18
AF124332_1(AF124332|pid:none) Danio rerio double-stranded RNA-sp...    37   1.5
BC095969_1(BC095969|pid:none) Mus musculus signal-induced prolif...    36   2.5
AK044193_1(AK044193|pid:none) Mus musculus 10 days neonate corte...    36   2.5
AF506894_1(AF506894|pid:none) Papaya ringspot virus isolate THW-...    35   4.3
protein update 2009. 6.30
PSORT 

 psg: 0.90  gvh: 0.47  alm: 0.43  top: 0.33  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.13  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFD557 is cyt
5' end seq. ID CFD557F
5' end seq. 
>CFD557F.Seq
GAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCAT
TTACGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACT
ATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAAC
CATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTA
CCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCC
CACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACC
TTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAA
ATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATG
CAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTC
AATTTTTCTGGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGATTT
C----------
Length of 5' end seq. 601
3' end seq. ID CFD557Z
3' end seq. 
>CFD557Z.Seq
----------TCTGGGAGTTTAATCCCAAAGGAATATTATTTTAACATGTGCTGATATAA
TGATTTCCAGTGGAGGTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAAT
ACCCACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAG
AACAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAG
AAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAAC
ATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAA
GTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATAC
TTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCA
AAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTA
ACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATT
CATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTNC
TATAGAAATGAATTNCTATGCTATTACNCTANCTGGTTATGATGNTTNCAAATAGTG
Length of 3' end seq. 707
Connected seq. ID CFD557P
Connected seq. 
>CFD557P.Seq
GAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCAT
TTACGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACT
ATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAAC
CATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTA
CCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCC
CACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACC
TTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAA
ATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATG
CAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTC
AATTTTTCTGGGAGTTTAATCCAAAGGAATATTATTTAACATGTGCTGATATAATGATTT
C----------TCTGGGAGTTTAATCCCAAAGGAATATTATTTTAACATGTGCTGATATA
ATGATTTCCAGTGGAGGTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAA
TACCCACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAA
GAACAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAA
GAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAA
CATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCA
AGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATA
CTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGC
AAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTT
AACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGAT
TCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTN
CTATAGAAATGAATTNCTATGCTATTACNCTANCTGGTTATGATGNTTNCAAATAGTG
Length of connected seq. 1308
Full length Seq ID CFD557E
Full length Seq. 
>CFD557E.Seq
GAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCAT
TTACGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACT
ATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAAC
CATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTA
CCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCC
CACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACC
TTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAA
ATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATG
CAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTC
AATTTTTCTGGGAGTTTAATCCCAAAGGAATATTATTTTAACATGTGCTGATATAATGAT
TTCCAGTGGAGGTGCATATCATTACCATGAACCACAAAGACCATCTCGAGAAGAATACCC
ACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACA
AGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAG
AGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAA
ATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGC
AAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGG
AAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAG
AACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCT
CTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATC
ATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTNCTATA
GAAATGAATTNCTATGCTATTACNCTANCTGGTTATGATGNTTNCAAATAGTG
Length of full length seq. 1253